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Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression.
Rasskazov D, Chadaeva I, Sharypova E, Zolotareva K, Khandaev B, Ponomarenko P, Podkolodnyy N, Tverdokhleb N, Vishnevsky O, Bogomolov A, Podkolodnaya O, Savinkova L, Zemlyanskaya E, Golubyatnikov V, Kolchanov N, Ponomarenko M. Rasskazov D, et al. Among authors: podkolodnaya o. Int J Mol Sci. 2022 Aug 4;23(15):8684. doi: 10.3390/ijms23158684. Int J Mol Sci. 2022. PMID: 35955817 Free PMC article.
Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection.
Bogomolov A, Filonov S, Chadaeva I, Rasskazov D, Khandaev B, Zolotareva K, Kazachek A, Oshchepkov D, Ivanisenko VA, Demenkov P, Podkolodnyy N, Kondratyuk E, Ponomarenko P, Podkolodnaya O, Mustafin Z, Savinkova L, Kolchanov N, Tverdokhleb N, Ponomarenko M. Bogomolov A, et al. Among authors: podkolodnaya o. Int J Mol Sci. 2023 May 19;24(10):9010. doi: 10.3390/ijms24109010. Int J Mol Sci. 2023. PMID: 37240358 Free PMC article.
AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.
Bogomolov A, Zolotareva K, Filonov S, Chadaeva I, Rasskazov D, Sharypova E, Podkolodnyy N, Ponomarenko P, Savinkova L, Tverdokhleb N, Khandaev B, Kondratyuk E, Podkolodnaya O, Zemlyanskaya E, Kolchanov NA, Ponomarenko M. Bogomolov A, et al. Among authors: podkolodnaya o. Int J Mol Sci. 2024 Jan 3;25(1):607. doi: 10.3390/ijms25010607. Int J Mol Sci. 2024. PMID: 38203780 Free PMC article.
NPRD: Nucleosome Positioning Region Database.
Levitsky VG, Katokhin AV, Podkolodnaya OA, Furman DP, Kolchanov NA. Levitsky VG, et al. Among authors: podkolodnaya oa. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D67-70. doi: 10.1093/nar/gki049. Nucleic Acids Res. 2005. PMID: 15608285 Free PMC article.
Unannotated single nucleotide polymorphisms in the TATA box of erythropoiesis genes show in vitro positive involvements in cognitive and mental disorders.
Ponomarenko M, Sharypova E, Drachkova I, Chadaeva I, Arkova O, Podkolodnaya O, Ponomarenko P, Kolchanov N, Savinkova L. Ponomarenko M, et al. Among authors: podkolodnaya o. BMC Med Genet. 2020 Oct 22;21(Suppl 1):165. doi: 10.1186/s12881-020-01106-x. BMC Med Genet. 2020. PMID: 33092544 Free PMC article.
Candidate SNP Markers of Chronopathologies Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters.
Ponomarenko P, Rasskazov D, Suslov V, Sharypova E, Savinkova L, Podkolodnaya O, Podkolodny NL, Tverdokhleb NN, Chadaeva I, Ponomarenko M, Kolchanov N. Ponomarenko P, et al. Among authors: podkolodnaya o. Biomed Res Int. 2016;2016:8642703. doi: 10.1155/2016/8642703. Epub 2016 Aug 22. Biomed Res Int. 2016. PMID: 27635400 Free PMC article.
GeneNet database: description and modeling of gene networks.
Kolchanov NA, Nedosekina EA, Ananko EA, Likhoshvai VA, Podkolodny NL, Ratushny AV, Stepanenko IL, Podkolodnaya OA, Ignatieva EV, Matushkin YG. Kolchanov NA, et al. Among authors: podkolodnaya oa. In Silico Biol. 2002;2(2):97-110. In Silico Biol. 2002. PMID: 12066844