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Page 1
Future potential of metagenomics in microbiology laboratories.
Expert Rev Mol Diagn. 2021 Dec;21(12):1273-1285. doi: 10.1080/14737159.2021.2001329.
Expert Rev Mol Diagn. 2021.
PMID: 34755585
Review.
Host DNA depletion can increase the sensitivity of Mycobacterium spp. detection through shotgun metagenomics in sputum.
Kok NA, Peker N, Schuele L, de Beer JL, Rossen JWA, Sinha B, Couto N.
Kok NA, et al. Among authors: peker n.
Front Microbiol. 2022 Oct 25;13:949328. doi: 10.3389/fmicb.2022.949328. eCollection 2022.
Front Microbiol. 2022.
PMID: 36386679
Free PMC article.
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Evaluation of whole-genome sequence data analysis approaches for short- and long-read sequencing of Mycobacterium tuberculosis.
Peker N, Schuele L, Kok N, Terrazos M, Neuenschwander SM, de Beer J, Akkerman O, Peter S, Ramette A, Merker M, Niemann S, Couto N, Sinha B, Rossen JW.
Peker N, et al.
Microb Genom. 2021 Nov;7(11):000695. doi: 10.1099/mgen.0.000695.
Microb Genom. 2021.
PMID: 34825880
Free PMC article.
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A Comparison of Three Different Bioinformatics Analyses of the 16S-23S rRNA Encoding Region for Bacterial Identification.
Peker N, Garcia-Croes S, Dijkhuizen B, Wiersma HH, van Zanten E, Wisselink G, Friedrich AW, Kooistra-Smid M, Sinha B, Rossen JWA, Couto N.
Peker N, et al.
Front Microbiol. 2019 Apr 16;10:620. doi: 10.3389/fmicb.2019.00620. eCollection 2019.
Front Microbiol. 2019.
PMID: 31040829
Free PMC article.
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Evaluation of an Accelerated Workflow for Surveillance of ESBL (CTX-M)-Producing Escherichia coli Using Amplicon-Based Next-Generation Sequencing and Automated Analysis.
Peker N, Rossen JWA, Deurenberg RH, Langereis PC, Raangs EGC, Kluytmans JA, Friedrich AW, Veenemans J, Sinha B.
Peker N, et al.
Microorganisms. 2018 Jan 11;6(1):6. doi: 10.3390/microorganisms6010006.
Microorganisms. 2018.
PMID: 29324655
Free PMC article.
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