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Page 1
Systematic pan-cancer analysis of somatic allele frequency.
Spurr L, Li M, Alomran N, Zhang Q, Restrepo P, Movassagh M, Trenkov C, Tunnessen N, Apanasovich T, Crandall KA, Edwards N, Horvath A. Spurr L, et al. Among authors: alomran n. Sci Rep. 2018 May 16;8(1):7735. doi: 10.1038/s41598-018-25462-0. Sci Rep. 2018. PMID: 29769535 Free PMC article.
Overexpressed somatic alleles are enriched in functional elements in Breast Cancer.
Restrepo P, Movassagh M, Alomran N, Miller C, Li M, Trenkov C, Manchev Y, Bahl S, Warnken S, Spurr L, Apanasovich T, Crandall K, Edwards N, Horvath A. Restrepo P, et al. Among authors: alomran n. Sci Rep. 2017 Aug 15;7(1):8287. doi: 10.1038/s41598-017-08416-w. Sci Rep. 2017. PMID: 28811643 Free PMC article.
GeTallele: A Method for Analysis of DNA and RNA Allele Frequency Distributions.
Słowiński P, Li M, Restrepo P, Alomran N, Spurr LF, Miller C, Tsaneva-Atanasova K, Horvath A. Słowiński P, et al. Among authors: alomran n. Front Bioeng Biotechnol. 2020 Sep 16;8:1021. doi: 10.3389/fbioe.2020.01021. eCollection 2020. Front Bioeng Biotechnol. 2020. PMID: 33042959 Free PMC article.
RNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing data.
Movassagh M, Alomran N, Mudvari P, Dede M, Dede C, Kowsari K, Restrepo P, Cauley E, Bahl S, Li M, Waterhouse W, Tsaneva-Atanasova K, Edwards N, Horvath A. Movassagh M, et al. Among authors: alomran n. Nucleic Acids Res. 2016 Dec 15;44(22):e161. doi: 10.1093/nar/gkw757. Epub 2016 Aug 30. Nucleic Acids Res. 2016. PMID: 27576531 Free PMC article.