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Using Equation-Free Computation to Accelerate Network-Free Stochastic Simulation of Chemical Kinetics.
J Phys Chem B. 2018 Jun 21;122(24):6351-6356. doi: 10.1021/acs.jpcb.8b02960. Epub 2018 Jun 8.
J Phys Chem B. 2018.
PMID: 29851484
Free PMC article.
Hierarchical graphs for rule-based modeling of biochemical systems.
Lemons NW, Hu B, Hlavacek WS.
Lemons NW, et al.
BMC Bioinformatics. 2011 Feb 2;12:45. doi: 10.1186/1471-2105-12-45.
BMC Bioinformatics. 2011.
PMID: 21288338
Free PMC article.
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Fast Generation of Sparse Random Kernel Graphs.
Hagberg A, Lemons N.
Hagberg A, et al. Among authors: lemons n.
PLoS One. 2015 Sep 10;10(9):e0135177. doi: 10.1371/journal.pone.0135177. eCollection 2015.
PLoS One. 2015.
PMID: 26356296
Free PMC article.
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