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1999 1
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2009 5
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87 results

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Conversion between 100-million-year-old duplicated genes contributes to rice subspecies divergence.
Wei C, Wang Z, Wang J, Teng J, Shen S, Xiao Q, Bao S, Feng Y, Zhang Y, Li Y, Sun S, Yue Y, Wu C, Wang Y, Zhou T, Xu W, Yu J, Wang L, Wang J. Wei C, et al. BMC Genomics. 2021 Jun 19;22(1):460. doi: 10.1186/s12864-021-07776-y. BMC Genomics. 2021. PMID: 34147070 Free PMC article.
BACKGROUND: Duplicated gene pairs produced by ancient polyploidy maintain high sequence similarity over a long period of time and may result from illegitimate recombination between homeologous chromosomes. The genomes of Asian cultivated rice Oryza sativa ssp. indic …
BACKGROUND: Duplicated gene pairs produced by ancient polyploidy maintain high sequence similarity over a long period of time and may result …
High-Quality Genomes and High-Density Genetic Map Facilitate the Identification of Genes From a Weedy Rice.
Li F, Han Z, Qiao W, Wang J, Song Y, Cui Y, Li J, Ge J, Lou D, Fan W, Li D, Nong B, Zhang Z, Cheng Y, Zhang L, Zheng X, Yang Q. Li F, et al. Front Plant Sci. 2021 Nov 19;12:775051. doi: 10.3389/fpls.2021.775051. eCollection 2021. Front Plant Sci. 2021. PMID: 34868173 Free PMC article.
Genes have been lost or weakened from cultivated rice during rice domestication and breeding. Weedy rice (Oryza sativa f. spontanea) is usually recognized as the progeny between cultivated rice and wild rice and is also known to harbor an …
Genes have been lost or weakened from cultivated rice during rice domestication and breeding. Weedy rice (Oryza …
Ancient rapid functional differentiation and fixation of the duplicated members in rice Dof genes after whole genome duplication.
Yu L, Ma S, Zhang X, Tian D, Yang S, Jia X, Traw MB. Yu L, et al. Plant J. 2021 Dec;108(5):1365-1381. doi: 10.1111/tpj.15516. Epub 2021 Oct 15. Plant J. 2021. PMID: 34585814 Free article.
Here, we use the newly published genome from a sedge, namely Kobresia littledalei, and CRISPR/Cas-9 editing to investigate how the Rho WGD event 70 million years ago (MYA) affected transcription factor evolutionary rates, fates, and function in rice (Oryza sa …
Here, we use the newly published genome from a sedge, namely Kobresia littledalei, and CRISPR/Cas-9 editing to investigate how the Rho WGD e …
The genome of the rice planthopper egg parasitoid wasps Anagrus nilaparvatae casts light on the chemo- and mechanosensation in parasitism.
Ma Y, Guo Z, Wang L, Wang B, Huang T, Tang B, Zhang G, Zhou Q. Ma Y, et al. BMC Genomics. 2022 Jul 28;23(1):541. doi: 10.1186/s12864-022-08656-9. BMC Genomics. 2022. PMID: 35902811 Free PMC article.
Anagrus nilaparvatae, a representative species of Mymaridae, is ideal for controlling rice planthopper due to its high rate of parasitism and ability to find hosts efficiently in paddy ridges and fields. ...The divergence time between A. nilaparvatae and the other seven Ch …
Anagrus nilaparvatae, a representative species of Mymaridae, is ideal for controlling rice planthopper due to its high rate of parasi …
Genome-wide investigation and expression analysis of APETALA-2 transcription factor subfamily reveals its evolution, expansion and regulatory role in abiotic stress responses in Indica Rice (Oryza sativa L. ssp. indica).
Ahmed S, Rashid MAR, Zafar SA, Azhar MT, Waqas M, Uzair M, Rana IA, Azeem F, Chung G, Ali Z, Atif RM. Ahmed S, et al. Genomics. 2021 Jan;113(1 Pt 2):1029-1043. doi: 10.1016/j.ygeno.2020.10.037. Epub 2020 Nov 4. Genomics. 2021. PMID: 33157261 Free article.
Rice is an important cereal crop that serves as staple food for more than half of the world population. ...These findings unveiled the evolutionary pathways of AP2-TF in rice, and can help the functional characterization under developmental and stress responses....
Rice is an important cereal crop that serves as staple food for more than half of the world population. ...These findings unveiled th …
The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
Rice Chromosomes 11 and 12 Sequencing Consortia. Rice Chromosomes 11 and 12 Sequencing Consortia. BMC Biol. 2005 Sep 27;3:20. doi: 10.1186/1741-7007-3-20. BMC Biol. 2005. PMID: 16188032 Free PMC article.
BACKGROUND: Rice is an important staple food and, with the smallest cereal genome, serves as a reference species for studies on the evolution of cereals and other grasses. ...Among them are 289 disease resistance-like and 28 defense-response genes, a higher proportion of t …
BACKGROUND: Rice is an important staple food and, with the smallest cereal genome, serves as a reference species for studies on the e …
Whole-genome assembly and annotation of northern wild rice, Zizania palustris L., supports a whole-genome duplication in the Zizania genus.
Haas M, Kono T, Macchietto M, Millas R, McGilp L, Shao M, Duquette J, Qiu Y, Hirsch CN, Kimball J. Haas M, et al. Plant J. 2021 Sep;107(6):1802-1818. doi: 10.1111/tpj.15419. Epub 2021 Aug 14. Plant J. 2021. PMID: 34310794 Free article.
The expansion of retrotransposons within the genome and a whole-genome duplication (WGD) after the Zizania-Oryza speciation event have both led to an increase in the genome size of NWR in comparison with Oryza sativa L. and Zizania latifolia. ...Estimates of diverge …
The expansion of retrotransposons within the genome and a whole-genome duplication (WGD) after the Zizania-Oryza speciation event hav …
Evolutionary expansion and functional diversification of oligopeptide transporter gene family in rice.
Liu T, Zeng J, Xia K, Fan T, Li Y, Wang Y, Xu X, Zhang M. Liu T, et al. Rice (N Y). 2012 Dec;5(1):12. doi: 10.1186/1939-8433-5-12. Epub 2012 Jun 22. Rice (N Y). 2012. PMID: 27234238 Free PMC article.
The first evolutionary stage occurred approximately 50 million years ago (Mya) and involved the evolution of four new genes. The second evolutionary stage was approximately 20 Mya and was marked by the appearance of two new genes, and the third evolutionary stage wa …
The first evolutionary stage occurred approximately 50 million years ago (Mya) and involved the evolution of four new genes. The seco …
Integrative methods reveal multiple drivers of diversification in rice paddy snakes.
Bernstein JM, Voris HK, Stuart BL, Karns DR, McGuire JA, Iskandar DT, Riyanto A, Calderón-Acevedo CA, Brown RM, Gehara M, Soto-Centeno JA, Ruane S. Bernstein JM, et al. Sci Rep. 2024 Mar 12;14(1):4727. doi: 10.1038/s41598-024-54744-z. Sci Rep. 2024. PMID: 38472264 Free PMC article.
In this study, we use coalescent demographic models to investigate the diversification of poorly known rice paddy snakes from Southeast Asia (Homalopsidae: Hypsiscopus), which have conflicting dates of origin based on previous studies. ...Our results suggest Hypsiscopus di …
In this study, we use coalescent demographic models to investigate the diversification of poorly known rice paddy snakes from Southea …
Extensive concerted evolution of rice paralogs and the road to regaining independence.
Wang X, Tang H, Bowers JE, Feltus FA, Paterson AH. Wang X, et al. Genetics. 2007 Nov;177(3):1753-63. doi: 10.1534/genetics.107.073197. Genetics. 2007. PMID: 18039882 Free PMC article.
Since divergence from subspecies indica, approximately 8% of japonica paralogs produced 5-7 MYA on chromosomes 11 and 12 have been affected by gene conversion and several reciprocal exchanges of chromosomal segments, while approximately 70-MY-old "paleologs" resulting from …
Since divergence from subspecies indica, approximately 8% of japonica paralogs produced 5-7 MYA on chromosomes 11 and 12 have been af …
87 results