Michael W. Berry - Search Results

Year	Number of Results
2003	1
2004	2
2005	1
2008	2
2010	1
2011	2
2013	1
2014	1
2017	1
2024	0

1

Classification of T cell movement tracks allows for prediction of cell function.

Kelemen RK, He GF, Woo HL, Lane T, Rempe C, Wang J, Cockburn IA, Amino R, Ganusov VV, Berry MW. Kelemen RK, et al. Among authors: berry mw. Int J Comput Biol Drug Des. 2014;7(2-3):113-29. doi: 10.1504/IJCBDD.2014.061655. Epub 2014 May 28. Int J Comput Biol Drug Des. 2014. PMID: 24878724

2

Gene clustering by latent semantic indexing of MEDLINE abstracts.

Homayouni R, Heinrich K, Wei L, Berry MW. Homayouni R, et al. Among authors: berry mw. Bioinformatics. 2005 Jan 1;21(1):104-15. doi: 10.1093/bioinformatics/bth464. Epub 2004 Aug 12. Bioinformatics. 2005. PMID: 15308538

3

Bioinformatic analysis reveals cRel as a regulator of a subset of interferon-stimulated genes.

Wei L, Fan M, Xu L, Heinrich K, Berry MW, Homayouni R, Pfeffer LM. Wei L, et al. Among authors: berry mw. J Interferon Cytokine Res. 2008 Sep;28(9):541-51. doi: 10.1089/jir.2007.0136. J Interferon Cytokine Res. 2008. PMID: 18715197 Free PMC article.

4

Functional cohesion of gene sets determined by latent semantic indexing of PubMed abstracts.

Xu L, Furlotte N, Lin Y, Heinrich K, Berry MW, George EO, Homayouni R. Xu L, et al. Among authors: berry mw. PLoS One. 2011 Apr 14;6(4):e18851. doi: 10.1371/journal.pone.0018851. PLoS One. 2011. PMID: 21533142 Free PMC article.

5

Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets.

Roy S, Heinrich K, Phan V, Berry MW, Homayouni R. Roy S, et al. Among authors: berry mw. BMC Bioinformatics. 2011 Oct 18;12 Suppl 10(Suppl 10):S19. doi: 10.1186/1471-2105-12-S10-S19. BMC Bioinformatics. 2011. PMID: 22165960 Free PMC article.

6

Navigating the Functional Landscape of Transcription Factors via Non-Negative Tensor Factorization Analysis of MEDLINE Abstracts.

Roy S, Yun D, Madahian B, Berry MW, Deng LY, Goldowitz D, Homayouni R. Roy S, et al. Among authors: berry mw. Front Bioeng Biotechnol. 2017 Aug 28;5:48. doi: 10.3389/fbioe.2017.00048. eCollection 2017. Front Bioeng Biotechnol. 2017. PMID: 28894735 Free PMC article.

7

PolyLens: software for map-based visualisation and analysis of genome-scale polymorphism data.

Berry MW, Gao T, Pathan R, Stuart GW. Berry MW, et al. Int J Comput Biol Drug Des. 2013;6(1-2):93-106. doi: 10.1504/IJCBDD.2013.052204. Epub 2013 Feb 21. Int J Comput Biol Drug Des. 2013. PMID: 23428476

8

An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage.

Stuart GW, Berry MW. Stuart GW, et al. Among authors: berry mw. BMC Bioinformatics. 2004 Dec 17;5:204. doi: 10.1186/1471-2105-5-204. BMC Bioinformatics. 2004. PMID: 15606920 Free PMC article.

9

Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization).

Tjioe E, Berry MW, Homayouni R. Tjioe E, et al. Among authors: berry mw. BMC Bioinformatics. 2010 Oct 7;11 Suppl 6(Suppl 6):S14. doi: 10.1186/1471-2105-11-S6-S14. BMC Bioinformatics. 2010. PMID: 20946597 Free PMC article.

10

A comprehensive whole genome bacterial phylogeny using correlated peptide motifs defined in a high dimensional vector space.

Stuart GW, Berry MW. Stuart GW, et al. Among authors: berry mw. J Bioinform Comput Biol. 2003 Oct;1(3):475-93. doi: 10.1142/s0219720003000265. J Bioinform Comput Biol. 2003. PMID: 15290766

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