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AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens.
Li C, Sutherland D, Hammond SA, Yang C, Taho F, Bergman L, Houston S, Warren RL, Wong T, Hoang LMN, Cameron CE, Helbing CC, Birol I. Li C, et al. BMC Genomics. 2022 Jan 25;23(1):77. doi: 10.1186/s12864-022-08310-4. BMC Genomics. 2022. PMID: 35078402 Free PMC article.
Antimicrobial peptides (AMPs) are attracting attention again as therapeutic agents with promising utility in this domain, and using in silico methods to discover novel AMPs is a strategy that is gaining interest. Such methods can sift through large volumes of candidate seq …
Antimicrobial peptides (AMPs) are attracting attention again as therapeutic agents with promising utility in this domain, and using in silic …
A graph-based approach for the retrieval of multi-modality medical images.
Kumar A, Kim J, Wen L, Fulham M, Feng D. Kumar A, et al. Med Image Anal. 2014 Feb;18(2):330-42. doi: 10.1016/j.media.2013.11.003. Epub 2013 Dec 6. Med Image Anal. 2014. PMID: 24378541
Our graph-based retrieval algorithm achieved a higher precision than several other retrieval techniques: gray-level histograms as well as state-of-the-art methods such as visual words using the scale- invariant feature transform (SIFT) and relational matrices representing …
Our graph-based retrieval algorithm achieved a higher precision than several other retrieval techniques: gray-level histograms as well as st …
BRIEF: Computing a Local Binary Descriptor Very Fast.
Calonder M, Lepetit V, Özuysal M, Trzcinski T, Strecha C, Fua P. Calonder M, et al. IEEE Trans Pattern Anal Mach Intell. 2012 Jul;34(7):1281-98. doi: 10.1109/TPAMI.2011.222. Epub 2011 Nov 15. IEEE Trans Pattern Anal Mach Intell. 2012. PMID: 22084141
The typical approach to creating them is to first compute floating-point ones, using an algorithm such as SIFT, and then to binarize them. In this paper, we show that we can directly compute a binary descriptor, which we call BRIEF, on the basis of simple intensity differe …
The typical approach to creating them is to first compute floating-point ones, using an algorithm such as SIFT, and then to binarize …
Short- and Long-Term Effects of a Dentifrice Containing Dual Zinc plus Arginine on Intra-Oral Halitosis: Improvements in Breath Quality.
Saad S, Fitzgerald M, Hewett K, Greenman J, Vandeven M, Trivedi HM, Masters JG. Saad S, et al. J Clin Dent. 2018 Sep;29(Spec No A):A46-54. J Clin Dent. 2018. PMID: 30620871 Clinical Trial.
Both studies used organoleptic and hedonic odor judge scores measured 12 hours overnight after product use as the primary efficacy variable. Additionally, the single use study employed SIFT-MS to quantify the intra-oral concentration of volatile sulfur compounds as a compl …
Both studies used organoleptic and hedonic odor judge scores measured 12 hours overnight after product use as the primary efficacy variable. …
Interference of chlorofluorocarbon (CFC)-containing inhalers with measurements of volatile compounds using selected ion flow tube mass spectrometry.
Epton MJ, Ledingham K, Dummer J, Hu WP, Rhodes B, Senthilmohan ST, Scotter JM, Allardyce R, Cook J, Swanney MP. Epton MJ, et al. Rapid Commun Mass Spectrom. 2009 Feb;23(3):443-7. doi: 10.1002/rcm.3875. Rapid Commun Mass Spectrom. 2009. PMID: 19125425
Selected ion flow tube mass spectrometry (SIFT-MS) is a sensitive technique capable of measuring volatile compounds (VCs) in complex gas mixtures in real time; it is now being applied to breath analysis. We investigated the effect of inhalers containing chlorofluorocarbons …
Selected ion flow tube mass spectrometry (SIFT-MS) is a sensitive technique capable of measuring volatile compounds (VCs) in complex …