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Page 1
The role of zinc finger linkers in zinc finger protein binding to DNA.
J Comput Aided Mol Des. 2021 Sep;35(9):973-986. doi: 10.1007/s10822-021-00413-6. Epub 2021 Aug 5.
J Comput Aided Mol Des. 2021.
PMID: 34350488
Role of protein structure and the role of individual fingers in zinc finger protein-DNA recognition: a molecular dynamics simulation study and free energy calculations.
Hamed MY.
Hamed MY.
J Comput Aided Mol Des. 2018 Jun;32(6):657-669. doi: 10.1007/s10822-018-0119-9. Epub 2018 May 3.
J Comput Aided Mol Des. 2018.
PMID: 29725908
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Iron(II) triggered conformational changes in Escherichia coli fur upon DNA binding: a study using molecular modeling.
Hamed MY, Al-Jabour S.
Hamed MY, et al.
J Mol Graph Model. 2006 Oct;25(2):234-46. doi: 10.1016/j.jmgm.2005.12.010. Epub 2006 Jan 27.
J Mol Graph Model. 2006.
PMID: 16443380
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Zinc finger protein binding to DNA: an energy perspective using molecular dynamics simulation and free energy calculations on mutants of both zinc finger domains and their specific DNA bases.
Hamed MY, Arya G.
Hamed MY, et al.
J Biomol Struct Dyn. 2016 May;34(5):919-34. doi: 10.1080/07391102.2015.1068224. Epub 2016 Feb 2.
J Biomol Struct Dyn. 2016.
PMID: 26196228
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Binding of the Zn2+ ion to ferric uptake regulation protein from E. coli and the competition with Fe2+ binding: a molecular modeling study of the effect on DNA binding and conformational changes of Fur.
Jabour S, Hamed MY.
Jabour S, et al. Among authors: hamed my.
J Comput Aided Mol Des. 2009 Apr;23(4):199-208. doi: 10.1007/s10822-008-9251-2. Epub 2008 Nov 21.
J Comput Aided Mol Des. 2009.
PMID: 19023664
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