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Why Are Left-Handed G-Quadruplexes Scarce?
Jurkowski M, Kogut M, Sappati S, Czub J. Jurkowski M, et al. Among authors: kogut m. J Phys Chem Lett. 2024 Mar 21;15(11):3142-3148. doi: 10.1021/acs.jpclett.3c03589. Epub 2024 Mar 13. J Phys Chem Lett. 2024. PMID: 38477716 Free PMC article.
How acidic amino acid residues facilitate DNA target site selection.
Hossain KA, Kogut M, Słabońska J, Sappati S, Wieczór M, Czub J. Hossain KA, et al. Among authors: kogut m. Proc Natl Acad Sci U S A. 2023 Jan 17;120(3):e2212501120. doi: 10.1073/pnas.2212501120. Epub 2023 Jan 12. Proc Natl Acad Sci U S A. 2023. PMID: 36634135 Free PMC article.
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Lensink MF, Brysbaert G, Mauri T, Nadzirin N, Velankar S, Chaleil RAG, Clarence T, Bates PA, Kong R, Liu B, Yang G, Liu M, Shi H, Lu X, Chang S, Roy RS, Quadir F, Liu J, Cheng J, Antoniak A, Czaplewski C, Giełdoń A, Kogut M, Lipska AG, Liwo A, Lubecka EA, Maszota-Zieleniak M, Sieradzan AK, Ślusarz R, Wesołowski PA, Zięba K, Del Carpio Muñoz CA, Ichiishi E, Harmalkar A, Gray JJ, Bonvin AMJJ, Ambrosetti F, Vargas Honorato R, Jandova Z, Jiménez-García B, Koukos PI, Van Keulen S, Van Noort CW, Réau M, Roel-Touris J, Kotelnikov S, Padhorny D, Porter KA, Alekseenko A, Ignatov M, Desta I, Ashizawa R, Sun Z, Ghani U, Hashemi N, Vajda S, Kozakov D, Rosell M, Rodríguez-Lumbreras LA, Fernandez-Recio J, Karczynska A, Grudinin S, Yan Y, Li H, Lin P, Huang SY, Christoffer C, Terashi G, Verburgt J, Sarkar D, Aderinwale T, Wang X, Kihara D, Nakamura T, Hanazono Y, Gowthaman R, Guest JD, Yin R, Taherzadeh G, Pierce BG, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Sun Y, Zhu S, Shen Y, Park T, Woo H, Yang J, Kwon S, Won J, Seok C, Kiyota Y, Kobayashi S, Harada Y, Takeda-Shitaka M, Kundrotas PJ, Singh A, Vakser IA, Dapkūnas J, Olechnovič K, Venclovas Č, Duan R, Qiu L, Xu X, Zhang S, Zou X,… See abstract for full author list ➔ Lensink MF, et al. Among authors: kogut m. Proteins. 2021 Dec;89(12):1800-1823. doi: 10.1002/prot.26222. Epub 2021 Sep 13. Proteins. 2021. PMID: 34453465 Free PMC article.
Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment.
Antoniak A, Biskupek I, Bojarski KK, Czaplewski C, Giełdoń A, Kogut M, Kogut MM, Krupa P, Lipska AG, Liwo A, Lubecka EA, Marcisz M, Maszota-Zieleniak M, Samsonov SA, Sieradzan AK, Ślusarz MJ, Ślusarz R, Wesołowski PA, Ziȩba K. Antoniak A, et al. Among authors: kogut m. J Mol Graph Model. 2021 Nov;108:108008. doi: 10.1016/j.jmgm.2021.108008. Epub 2021 Aug 17. J Mol Graph Model. 2021. PMID: 34419932
The Product of Matrix Metalloproteinase Cleavage of Doxorubicin Conjugate for Anticancer Drug Delivery: Calorimetric, Spectroscopic, and Molecular Dynamics Studies on Peptide-Doxorubicin Binding to DNA.
Butowska K, Żamojć K, Kogut M, Kozak W, Wyrzykowski D, Wiczk W, Czub J, Piosik J, Rak J. Butowska K, et al. Among authors: kogut m. Int J Mol Sci. 2020 Sep 21;21(18):6923. doi: 10.3390/ijms21186923. Int J Mol Sci. 2020. PMID: 32967212 Free PMC article.
11 results