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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2004 1
2005 2
2006 1
2007 3
2008 2
2009 4
2010 3
2011 2
2012 3
2013 3
2014 3
2015 4
2016 4
2017 1
2018 2
2019 3
2020 1
2021 4
2022 1
2023 2
2024 1

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Page 1
The EcoCyc Database.
Karp PD, Ong WK, Paley S, Billington R, Caspi R, Fulcher C, Kothari A, Krummenacker M, Latendresse M, Midford PE, Subhraveti P, Gama-Castro S, Muñiz-Rascado L, Bonavides-Martinez C, Santos-Zavaleta A, Mackie A, Collado-Vides J, Keseler IM, Paulsen I. Karp PD, et al. Among authors: krummenacker m. EcoSal Plus. 2018 Nov;8(1):10.1128/ecosalplus.ESP-0006-2018. doi: 10.1128/ecosalplus.ESP-0006-2018. EcoSal Plus. 2018. PMID: 30406744 Free PMC article. Review.
The EcoCyc Database (2023).
Karp PD, Paley S, Caspi R, Kothari A, Krummenacker M, Midford PE, Moore LR, Subhraveti P, Gama-Castro S, Tierrafria VH, Lara P, Muñiz-Rascado L, Bonavides-Martinez C, Santos-Zavaleta A, Mackie A, Sun G, Ahn-Horst TA, Choi H, Covert MW, Collado-Vides J, Paulsen I. Karp PD, et al. Among authors: krummenacker m. EcoSal Plus. 2023 Dec 12;11(1):eesp00022023. doi: 10.1128/ecosalplus.esp-0002-2023. Epub 2023 May 11. EcoSal Plus. 2023. PMID: 37220074 Free article. Review.
SynRoute: A Retrosynthetic Planning Software.
Latendresse M, Malerich JP, Herson J, Krummenacker M, Szeto J, Vu VA, Collins N, Madrid PB. Latendresse M, et al. Among authors: krummenacker m. J Chem Inf Model. 2023 Sep 11;63(17):5484-5495. doi: 10.1021/acs.jcim.3c00491. Epub 2023 Aug 27. J Chem Inf Model. 2023. PMID: 37635298 Free PMC article.
The EcoCyc Database.
Karp PD, Weaver D, Paley S, Fulcher C, Kubo A, Kothari A, Krummenacker M, Subhraveti P, Weerasinghe D, Gama-Castro S, Huerta AM, Muñiz-Rascado L, Bonavides-Martinez C, Weiss V, Peralta-Gil M, Santos-Zavaleta A, Schröder I, Mackie A, Gunsalus R, Collado-Vides J, Keseler IM, Paulsen I. Karp PD, et al. Among authors: krummenacker m. EcoSal Plus. 2014 May;6(1):10.1128/ecosalplus.ESP-0009-2013. doi: 10.1128/ecosalplus.ESP-0009-2013. EcoSal Plus. 2014. PMID: 26442933 Free PMC article.
A Comparison of Microbial Genome Web Portals.
Karp PD, Ivanova N, Krummenacker M, Kyrpides N, Latendresse M, Midford P, Ong WK, Paley S, Seshadri R. Karp PD, et al. Among authors: krummenacker m. Front Microbiol. 2019 Feb 22;10:208. doi: 10.3389/fmicb.2019.00208. eCollection 2019. Front Microbiol. 2019. PMID: 30853946 Free PMC article. Review.
The EcoCyc Database in 2021.
Keseler IM, Gama-Castro S, Mackie A, Billington R, Bonavides-Martínez C, Caspi R, Kothari A, Krummenacker M, Midford PE, Muñiz-Rascado L, Ong WK, Paley S, Santos-Zavaleta A, Subhraveti P, Tierrafría VH, Wolfe AJ, Collado-Vides J, Paulsen IT, Karp PD. Keseler IM, et al. Among authors: krummenacker m. Front Microbiol. 2021 Jul 28;12:711077. doi: 10.3389/fmicb.2021.711077. eCollection 2021. Front Microbiol. 2021. PMID: 34394059 Free PMC article.
Metabolic route computation in organism communities.
Krummenacker M, Latendresse M, Karp PD. Krummenacker M, et al. Microbiome. 2019 Jun 7;7(1):89. doi: 10.1186/s40168-019-0706-6. Microbiome. 2019. PMID: 31174602 Free PMC article.
Pathway Tools Management of Pathway/Genome Data for Microbial Communities.
Karp PD, Paley S, Krummenacker M, Kothari A, Wannemuehler MJ, Phillips GJ. Karp PD, et al. Among authors: krummenacker m. Front Bioinform. 2022 Apr 26;2:869150. doi: 10.3389/fbinf.2022.869150. eCollection 2022. Front Bioinform. 2022. PMID: 36304298 Free PMC article.
37 results