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A six-amino-acid motif is a major determinant in functional evolution of HOX1 proteins.
Genes Dev. 2020 Dec 1;34(23-24):1680-1696. doi: 10.1101/gad.342329.120. Epub 2020 Nov 12.
Genes Dev. 2020.
PMID: 33184220
Free PMC article.
Genome-Wide Binding Analyses of HOXB1 Revealed a Novel DNA Binding Motif Associated with Gene Repression.
Singh NP, De Kumar B, Paulson A, Parrish ME, Scott C, Zhang Y, Florens L, Krumlauf R.
Singh NP, et al. Among authors: parrish me.
J Dev Biol. 2021 Feb 3;9(1):6. doi: 10.3390/jdb9010006.
J Dev Biol. 2021.
PMID: 33546292
Free PMC article.
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Hoxa1 targets signaling pathways during neural differentiation of ES cells and mouse embryogenesis.
De Kumar B, Parker HJ, Paulson A, Parrish ME, Zeitlinger J, Krumlauf R.
De Kumar B, et al. Among authors: parrish me.
Dev Biol. 2017 Dec 1;432(1):151-164. doi: 10.1016/j.ydbio.2017.09.033. Epub 2017 Oct 2.
Dev Biol. 2017.
PMID: 28982536
Free article.
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Dynamic regulation of Nanog and stem cell-signaling pathways by Hoxa1 during early neuro-ectodermal differentiation of ES cells.
De Kumar B, Parker HJ, Parrish ME, Lange JJ, Slaughter BD, Unruh JR, Paulson A, Krumlauf R.
De Kumar B, et al. Among authors: parrish me.
Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):5838-5845. doi: 10.1073/pnas.1610612114.
Proc Natl Acad Sci U S A. 2017.
PMID: 28584089
Free PMC article.
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HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets.
De Kumar B, Parker HJ, Paulson A, Parrish ME, Pushel I, Singh NP, Zhang Y, Slaughter BD, Unruh JR, Florens L, Zeitlinger J, Krumlauf R.
De Kumar B, et al. Among authors: parrish me.
Genome Res. 2017 Sep;27(9):1501-1512. doi: 10.1101/gr.219386.116. Epub 2017 Aug 7.
Genome Res. 2017.
PMID: 28784834
Free PMC article.
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Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells.
De Kumar B, Parrish ME, Slaughter BD, Unruh JR, Gogol M, Seidel C, Paulson A, Li H, Gaudenz K, Peak A, McDowell W, Fleharty B, Ahn Y, Lin C, Smith E, Shilatifard A, Krumlauf R.
De Kumar B, et al. Among authors: parrish me.
Genome Res. 2015 Aug;25(8):1229-43. doi: 10.1101/gr.184978.114. Epub 2015 May 29.
Genome Res. 2015.
PMID: 26025802
Free PMC article.
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