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BlotIt-Optimal alignment of Western blot and qPCR experiments.
Kemmer S, Bang S, Rosenblatt M, Timmer J, Kaschek D. Kemmer S, et al. Among authors: rosenblatt m. PLoS One. 2022 Aug 10;17(8):e0264295. doi: 10.1371/journal.pone.0264295. eCollection 2022. PLoS One. 2022. PMID: 35947551 Free PMC article.
PEtab-Interoperable specification of parameter estimation problems in systems biology.
Schmiester L, Schälte Y, Bergmann FT, Camba T, Dudkin E, Egert J, Fröhlich F, Fuhrmann L, Hauber AL, Kemmer S, Lakrisenko P, Loos C, Merkt S, Müller W, Pathirana D, Raimúndez E, Refisch L, Rosenblatt M, Stapor PL, Städter P, Wang D, Wieland FG, Banga JR, Timmer J, Villaverde AF, Sahle S, Kreutz C, Hasenauer J, Weindl D. Schmiester L, et al. Among authors: rosenblatt m. PLoS Comput Biol. 2021 Jan 26;17(1):e1008646. doi: 10.1371/journal.pcbi.1008646. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33497393 Free PMC article.
Uncovering specific mechanisms across cell types in dynamical models.
Hauber AL, Rosenblatt M, Timmer J. Hauber AL, et al. Among authors: rosenblatt m. PLoS Comput Biol. 2023 Sep 13;19(9):e1010867. doi: 10.1371/journal.pcbi.1010867. eCollection 2023 Sep. PLoS Comput Biol. 2023. PMID: 37703301 Free PMC article.
Disentangling molecular mechanisms regulating sensitization of interferon alpha signal transduction.
Kok F, Rosenblatt M, Teusel M, Nizharadze T, Gonçalves Magalhães V, Dächert C, Maiwald T, Vlasov A, Wäsch M, Tyufekchieva S, Hoffmann K, Damm G, Seehofer D, Boettler T, Binder M, Timmer J, Schilling M, Klingmüller U. Kok F, et al. Among authors: rosenblatt m. Mol Syst Biol. 2020 Jul;16(7):e8955. doi: 10.15252/msb.20198955. Mol Syst Biol. 2020. PMID: 32696599 Free PMC article.
Dynamic modeling of Nrf2 pathway activation in liver cells after toxicant exposure.
Hiemstra S, Fehling-Kaschek M, Kuijper IA, Bischoff LJM, Wijaya LS, Rosenblatt M, Esselink J, van Egmond A, Mos J, Beltman JB, Timmer J, van de Water B, Kaschek D. Hiemstra S, et al. Among authors: rosenblatt m. Sci Rep. 2022 May 5;12(1):7336. doi: 10.1038/s41598-022-10857-x. Sci Rep. 2022. PMID: 35513409 Free PMC article.