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The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.
Cell Syst. 2018 Jan 24;6(1):13-24. doi: 10.1016/j.cels.2017.11.001. Epub 2017 Nov 29.
Cell Syst. 2018.
PMID: 29199020
Free PMC article.
Review.
Connecting omics signatures and revealing biological mechanisms with iLINCS.
Pilarczyk M, Fazel-Najafabadi M, Kouril M, Shamsaei B, Vasiliauskas J, Niu W, Mahi N, Zhang L, Clark NA, Ren Y, White S, Karim R, Xu H, Biesiada J, Bennett MF, Davidson SE, Reichard JF, Roberts K, Stathias V, Koleti A, Vidovic D, Clarke DJB, Schürer SC, Ma'ayan A, Meller J, Medvedovic M.
Pilarczyk M, et al.
Nat Commun. 2022 Aug 9;13(1):4678. doi: 10.1038/s41467-022-32205-3.
Nat Commun. 2022.
PMID: 35945222
Free PMC article.
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GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data.
Mahi NA, Najafabadi MF, Pilarczyk M, Kouril M, Medvedovic M.
Mahi NA, et al. Among authors: pilarczyk m.
Sci Rep. 2019 May 20;9(1):7580. doi: 10.1038/s41598-019-43935-8.
Sci Rep. 2019.
PMID: 31110304
Free PMC article.
Item in Clipboard
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.
Stathias V, Turner J, Koleti A, Vidovic D, Cooper D, Fazel-Najafabadi M, Pilarczyk M, Terryn R, Chung C, Umeano A, Clarke DJB, Lachmann A, Evangelista JE, Ma'ayan A, Medvedovic M, Schürer SC.
Stathias V, et al. Among authors: pilarczyk m.
Nucleic Acids Res. 2020 Jan 8;48(D1):D431-D439. doi: 10.1093/nar/gkz1023.
Nucleic Acids Res. 2020.
PMID: 31701147
Free PMC article.
Item in Clipboard
piNET: a versatile web platform for downstream analysis and visualization of proteomics data.
Shamsaei B, Chojnacki S, Pilarczyk M, Najafabadi M, Niu W, Chen C, Ross K, Matlock A, Muhlich J, Chutipongtanate S, Zheng J, Turner J, Vidović D, Jaffe J, MacCoss M, Wu C, Pillai A, Ma'ayan A, Schürer S, Kouril M, Medvedovic M, Meller J.
Shamsaei B, et al. Among authors: pilarczyk m.
Nucleic Acids Res. 2020 Jul 2;48(W1):W85-W93. doi: 10.1093/nar/gkaa436.
Nucleic Acids Res. 2020.
PMID: 32469073
Free PMC article.
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GRcalculator: an online tool for calculating and mining dose-response data.
Clark NA, Hafner M, Kouril M, Williams EH, Muhlich JL, Pilarczyk M, Niepel M, Sorger PK, Medvedovic M.
Clark NA, et al. Among authors: pilarczyk m.
BMC Cancer. 2017 Oct 24;17(1):698. doi: 10.1186/s12885-017-3689-3.
BMC Cancer. 2017.
PMID: 29065900
Free PMC article.
Item in Clipboard
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.
Koleti A, Terryn R, Stathias V, Chung C, Cooper DJ, Turner JP, Vidovic D, Forlin M, Kelley TT, D'Urso A, Allen BK, Torre D, Jagodnik KM, Wang L, Jenkins SL, Mader C, Niu W, Fazel M, Mahi N, Pilarczyk M, Clark N, Shamsaei B, Meller J, Vasiliauskas J, Reichard J, Medvedovic M, Ma'ayan A, Pillai A, Schürer SC.
Koleti A, et al. Among authors: pilarczyk m.
Nucleic Acids Res. 2018 Jan 4;46(D1):D558-D566. doi: 10.1093/nar/gkx1063.
Nucleic Acids Res. 2018.
PMID: 29140462
Free PMC article.
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