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Automated RNA 3D Structure Prediction with RNAComposer.
Biesiada M, Purzycka KJ, Szachniuk M, Blazewicz J, Adamiak RW. Biesiada M, et al. Methods Mol Biol. 2016;1490:199-215. doi: 10.1007/978-1-4939-6433-8_13. Methods Mol Biol. 2016. PMID: 27665601
Eukaryotic Ribosomal Expansion Segments as Antimicrobial Targets.
Gómez Ramos LM, Degtyareva NN, Kovacs NA, Holguin SY, Jiang L, Petrov AS, Biesiada M, Hu MY, Purzycka KJ, Arya DP, Williams LD. Gómez Ramos LM, et al. Among authors: biesiada m. Biochemistry. 2017 Oct 10;56(40):5288-5299. doi: 10.1021/acs.biochem.7b00703. Epub 2017 Sep 26. Biochemistry. 2017. PMID: 28895721
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
Miao Z, Adamiak RW, Antczak M, Batey RT, Becka AJ, Biesiada M, Boniecki MJ, Bujnicki JM, Chen SJ, Cheng CY, Chou FC, Ferré-D'Amaré AR, Das R, Dawson WK, Ding F, Dokholyan NV, Dunin-Horkawicz S, Geniesse C, Kappel K, Kladwang W, Krokhotin A, Łach GE, Major F, Mann TH, Magnus M, Pachulska-Wieczorek K, Patel DJ, Piccirilli JA, Popenda M, Purzycka KJ, Ren A, Rice GM, Santalucia J Jr, Sarzynska J, Szachniuk M, Tandon A, Trausch JJ, Tian S, Wang J, Weeks KM, Williams B 2nd, Xiao Y, Xu X, Zhang D, Zok T, Westhof E. Miao Z, et al. Among authors: biesiada m. RNA. 2017 May;23(5):655-672. doi: 10.1261/rna.060368.116. Epub 2017 Jan 30. RNA. 2017. PMID: 28138060 Free PMC article.
Characterizing the functions of Ty1 Gag and the Gag-derived restriction factor p22/p18.
Pachulska-Wieczorek K, Błaszczyk L, Gumna J, Nishida Y, Saha A, Biesiada M, Garfinkel DJ, Purzycka KJ. Pachulska-Wieczorek K, et al. Among authors: biesiada m. Mob Genet Elements. 2016 Mar 7;6(2):e1154637. doi: 10.1080/2159256X.2016.1154637. eCollection 2016 Mar-Apr. Mob Genet Elements. 2016. PMID: 27141325 Free PMC article.