Identification of Binding Proteins for TSC22D1 Family Proteins Using Mass Spectrometry

Int J Mol Sci. 2021 Oct 9;22(20):10913. doi: 10.3390/ijms222010913.

Abstract

TSC-22 (TGF-β stimulated clone-22) has been reported to induce differentiation, growth inhibition, and apoptosis in various cells. TSC-22 is a member of a family in which many proteins are produced from four different family genes. TSC-22 (corresponding to TSC22D1-2) is composed of 144 amino acids translated from a short variant mRNA of the TSC22D1 gene. In this study, we attempted to determine the intracellular localizations of the TSC22D1 family proteins (TSC22D1-1, TSC-22 (TSC22D1-2), and TSC22(86) (TSC22D1-3)) and identify the binding proteins for TSC22D1 family proteins by mass spectrometry. We determined that TSC22D1-1 was mostly localized in the nucleus, TSC-22 (TSC22D1-2) was localized in the cytoplasm, mainly in the mitochondria and translocated from the cytoplasm to the nucleus after DNA damage, and TSC22(86) (TSC22D1-3) was localized in both the cytoplasm and nucleus. We identified multiple candidates of binding proteins for TSC22D1 family proteins in in vitro pull-down assays and in vivo binding assays. Histone H1 bound to TSC-22 (TSC22D1-2) or TSC22(86) (TSC22D1-3) in the nucleus. Guanine nucleotide-binding protein-like 3 (GNL3), which is also known as nucleostemin, bound to TSC-22 (TSC22D1-2) in the nucleus. Further investigation of the interaction of the candidate binding proteins with TSC22D1 family proteins would clarify the biological roles of TSC22D1 family proteins in several cell systems.

Keywords: Guanine nucleotide-binding protein-like 3 (GNL3); Histone H1; TSC22D1 family proteins; binding protein; differentiation-inducing therapy; mass spectrometry; molecular-targeted therapy.

MeSH terms

  • Alternative Splicing
  • Cell Differentiation
  • Cell Line
  • Cell Nucleus / metabolism
  • Cytoplasm / metabolism
  • DNA Damage
  • GTP-Binding Proteins / metabolism*
  • HEK293 Cells
  • Histones / metabolism*
  • Humans
  • Mass Spectrometry
  • Mitochondria / metabolism
  • Nuclear Proteins / metabolism*
  • Protein Binding
  • Protein Interaction Maps
  • Repressor Proteins / metabolism*

Substances

  • GNL3 protein, human
  • Histones
  • Nuclear Proteins
  • Repressor Proteins
  • TSC22D1 protein, human
  • GTP-Binding Proteins