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Page 1
The Enzyme Portal: an integrative tool for enzyme information and analysis.
Zaru R, Onwubiko J, Ribeiro AJM, Cochrane K, Tyzack JD, Muthukrishnan V, Pravda L, Thornton JM, O'Donovan C, Velanker S, Orchard S, Leach A, Martin MJ. Zaru R, et al. Among authors: pravda l. FEBS J. 2022 Oct;289(19):5875-5890. doi: 10.1111/febs.16168. Epub 2021 Sep 3. FEBS J. 2022. PMID: 34437766 Free article. Review.
PDBsum: Structural summaries of PDB entries.
Laskowski RA, Jabłońska J, Pravda L, Vařeková RS, Thornton JM. Laskowski RA, et al. Among authors: pravda l. Protein Sci. 2018 Jan;27(1):129-134. doi: 10.1002/pro.3289. Epub 2017 Oct 27. Protein Sci. 2018. PMID: 28875543 Free PMC article.
Finding enzyme cofactors in Protein Data Bank.
Mukhopadhyay A, Borkakoti N, Pravda L, Tyzack JD, Thornton JM, Velankar S. Mukhopadhyay A, et al. Among authors: pravda l. Bioinformatics. 2019 Sep 15;35(18):3510-3511. doi: 10.1093/bioinformatics/btz115. Bioinformatics. 2019. PMID: 30759194 Free PMC article.
ChannelsDB: database of biomacromolecular tunnels and pores.
Pravda L, Sehnal D, Svobodová Vareková R, Navrátilová V, Toušek D, Berka K, Otyepka M, Koca J. Pravda L, et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D399-D405. doi: 10.1093/nar/gkx868. Nucleic Acids Res. 2018. PMID: 29036719 Free PMC article.
PDBeCIF: an open-source mmCIF/CIF parsing and processing package.
van Ginkel G, Pravda L, Dana JM, Varadi M, Keller P, Anyango S, Velankar S. van Ginkel G, et al. Among authors: pravda l. BMC Bioinformatics. 2021 Jul 23;22(1):383. doi: 10.1186/s12859-021-04271-9. BMC Bioinformatics. 2021. PMID: 34301175 Free PMC article.
Anatomy of enzyme channels.
Pravda L, Berka K, Svobodová Vařeková R, Sehnal D, Banáš P, Laskowski RA, Koča J, Otyepka M. Pravda L, et al. BMC Bioinformatics. 2014 Nov 18;15(1):379. doi: 10.1186/s12859-014-0379-x. BMC Bioinformatics. 2014. PMID: 25403510 Free PMC article.
PDBe: improved findability of macromolecular structure data in the PDB.
Armstrong DR, Berrisford JM, Conroy MJ, Gutmanas A, Anyango S, Choudhary P, Clark AR, Dana JM, Deshpande M, Dunlop R, Gane P, Gáborová R, Gupta D, Haslam P, Koča J, Mak L, Mir S, Mukhopadhyay A, Nadzirin N, Nair S, Paysan-Lafosse T, Pravda L, Sehnal D, Salih O, Smart O, Tolchard J, Varadi M, Svobodova-Vařeková R, Zaki H, Kleywegt GJ, Velankar S. Armstrong DR, et al. Among authors: pravda l. Nucleic Acids Res. 2020 Jan 8;48(D1):D335-D343. doi: 10.1093/nar/gkz990. Nucleic Acids Res. 2020. PMID: 31691821 Free PMC article.
23 results