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Page 1
A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses.
Kutnjak D, Tamisier L, Adams I, Boonham N, Candresse T, Chiumenti M, De Jonghe K, Kreuze JF, Lefebvre M, Silva G, Malapi-Wight M, Margaria P, Mavrič Pleško I, McGreig S, Miozzi L, Remenant B, Reynard JS, Rollin J, Rott M, Schumpp O, Massart S, Haegeman A. Kutnjak D, et al. Among authors: tamisier l. Microorganisms. 2021 Apr 14;9(4):841. doi: 10.3390/microorganisms9040841. Microorganisms. 2021. PMID: 33920047 Free PMC article. Review.
Molecular and biological characterization of a new mulberry idaeovirus.
Gürcan K, Turan S, Teber S, Kılınçer İ, Uz İ, Tamisier L, Massart S, Çağlayan K. Gürcan K, et al. Among authors: tamisier l. Virus Res. 2021 Jun;298:198411. doi: 10.1016/j.virusres.2021.198411. Epub 2021 Apr 3. Virus Res. 2021. PMID: 33823226
Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies.
Rollin J, Bester R, Brostaux Y, Caglayan K, De Jonghe K, Eichmeier A, Foucart Y, Haegeman A, Koloniuk I, Kominek P, Maree H, Onder S, Posada Céspedes S, Roumi V, Šafářová D, Schumpp O, Ulubas Serce C, Sõmera M, Tamisier L, Vainio E, van der Vlugt RA, Massart S. Rollin J, et al. Among authors: tamisier l. PeerJ. 2023 Aug 16;11:e15816. doi: 10.7717/peerj.15816. eCollection 2023. PeerJ. 2023. PMID: 37601254 Free PMC article.
Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests.
Haegeman A, Foucart Y, De Jonghe K, Goedefroit T, Al Rwahnih M, Boonham N, Candresse T, Gaafar YZA, Hurtado-Gonzales OP, Kogej Zwitter Z, Kutnjak D, Lamovšek J, Lefebvre M, Malapi M, Mavrič Pleško I, Önder S, Reynard JS, Salavert Pamblanco F, Schumpp O, Stevens K, Pal C, Tamisier L, Ulubaş Serçe Ç, van Duivenbode I, Waite DW, Hu X, Ziebell H, Massart S. Haegeman A, et al. Among authors: tamisier l. Plants (Basel). 2023 May 29;12(11):2139. doi: 10.3390/plants12112139. Plants (Basel). 2023. PMID: 37299118 Free PMC article.
Going beyond consensus genome sequences: An innovative SNP-based methodology reconstructs different Ugandan cassava brown streak virus haplotypes at a nationwide scale in Rwanda.
Nyirakanani C, Tamisier L, Bizimana JP, Rollin J, Nduwumuremyi A, Bigirimana VP, Selmi I, Lasois L, Vanderschuren H, Massart S. Nyirakanani C, et al. Among authors: tamisier l. Virus Evol. 2023 Aug 24;9(2):vead053. doi: 10.1093/ve/vead053. eCollection 2023. Virus Evol. 2023. PMID: 37692897 Free PMC article.
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