Novel Chaperones Rr GroEL and Rr GroES for Activity and Stability Enhancement of Nitrilase in Escherichia coli and Rhodococcus ruber

Molecules. 2020 Feb 24;25(4):1002. doi: 10.3390/molecules25041002.

Abstract

For large-scale bioproduction, thermal stability is a crucial property for most industrial enzymes. A new method to improve both the thermal stability and activity of enzymes is of great significance. In this work, the novel chaperones RrGroEL and RrGroES from Rhodococcus ruber, a nontypical actinomycete with high organic solvent tolerance, were evaluated and applied for thermal stability and activity enhancement of a model enzyme, nitrilase. Two expression strategies, namely, fusion expression and co-expression, were compared in two different hosts, E. coli and R. ruber. In the E. coli host, fusion expression of nitrilase with either RrGroES or RrGroEL significantly enhanced nitrilase thermal stability (4.8-fold and 10.6-fold, respectively) but at the expense of enzyme activity (32-47% reduction). The co-expression strategy was applied in R. ruber via either a plasmid-only or genome-plus-plasmid method. Through integration of the nitrilase gene into the R. ruber genome at the site of nitrile hydratase (NHase) gene via CRISPR/Cas9 technology and overexpression of RrGroES or RrGroEL with a plasmid, the engineered strains R. ruber TH3 dNHase::RrNit (pNV18.1-Pami-RrNit-Pami-RrGroES) and TH3 dNHase::RrNit (pNV18.1-Pami-RrNit-Pami-RrGroEL) were constructed and showed remarkably enhanced nitrilase activity and thermal stability. In particular, the RrGroEL and nitrilase co-expressing mutant showed the best performance, with nitrilase activity and thermal stability 1.3- and 8.4-fold greater than that of the control TH3 (pNV18.1-Pami-RrNit), respectively. These findings are of great value for production of diverse chemicals using free bacterial cells as biocatalysts.

Keywords: E. coli; R. ruber; chaperone; nitrilase; stability.

MeSH terms

  • Aminohydrolases / chemistry
  • Aminohydrolases / genetics
  • Aminohydrolases / metabolism*
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • CRISPR-Cas Systems
  • Chaperonin 60 / chemistry
  • Chaperonin 60 / genetics
  • Chaperonin 60 / metabolism*
  • Cloning, Molecular
  • Enzyme Stability
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Gene Editing
  • Gene Expression
  • Genetic Engineering / methods
  • Genome, Bacterial*
  • Humans
  • Kinetics
  • Models, Molecular
  • Plasmids / chemistry
  • Plasmids / metabolism
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Stability
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Rhodococcus / enzymology*
  • Rhodococcus / genetics

Substances

  • Bacterial Proteins
  • Chaperonin 60
  • Recombinant Fusion Proteins
  • Aminohydrolases
  • nitrilase

Supplementary concepts

  • Rhodococcus ruber