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Page 1
Is there an advantageous arrangement of aromatic residues in proteins? Statistical analysis of aromatic interactions in globular proteins.
Comput Struct Biotechnol J. 2021 Nov 1;19:5960-5968. doi: 10.1016/j.csbj.2021.10.036. eCollection 2021.
Comput Struct Biotechnol J. 2021.
PMID: 34849200
Free PMC article.
Right- and left-handed three-helix proteins. I. Experimental and simulation analysis of differences in folding and structure.
Glyakina AV, Pereyaslavets LB, Galzitskaya OV.
Glyakina AV, et al. Among authors: pereyaslavets lb.
Proteins. 2013 Sep;81(9):1527-41. doi: 10.1002/prot.24301. Epub 2013 Jun 20.
Proteins. 2013.
PMID: 23588993
Item in Clipboard
What handedness and angles between helices has the studied three-helical protein domain?
Pereyaslavets LB, Glyakina AV, Dovidchenko NV, Sokolovskiy IV, Galzitskaya OV.
Pereyaslavets LB, et al.
Bioinformatics. 2015 Mar 15;31(6):963-5. doi: 10.1093/bioinformatics/btu737. Epub 2014 Nov 10.
Bioinformatics. 2015.
PMID: 25388147
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Assessment of performance of the general purpose polarizable force field QMPFF3 in condensed phase.
Donchev AG, Galkin NG, Illarionov AA, Khoruzhii OV, Olevanov MA, Ozrin VD, Pereyaslavets LB, Tarasov VI.
Donchev AG, et al. Among authors: pereyaslavets lb.
J Comput Chem. 2008 Jun;29(8):1242-9. doi: 10.1002/jcc.20884.
J Comput Chem. 2008.
PMID: 18161686
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FoldNucleus: web server for the prediction of RNA and protein folding nuclei from their 3D structures.
Pereyaslavets LB, Sokolovsky IV, Galzitskaya OV.
Pereyaslavets LB, et al.
Bioinformatics. 2015 Oct 15;31(20):3374-6. doi: 10.1093/bioinformatics/btv369. Epub 2015 Jun 22.
Bioinformatics. 2015.
PMID: 26104744
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Development and testing of PFFSol1.1, a new polarizable atomic force field for calculation of molecular interactions in implicit water environment.
Pereyaslavets LB, Finkelstein AV.
Pereyaslavets LB, et al.
J Phys Chem B. 2012 Apr 19;116(15):4646-54. doi: 10.1021/jp212474p. Epub 2012 Apr 9.
J Phys Chem B. 2012.
PMID: 22439906
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