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2011 1
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Page 1
Unraveling the functional dark matter through global metagenomics.
Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E; Novel Metagenome Protein Families Consortium; Iliopoulos I, Konstantinidis K, Tiedje JM, Pett-Ridge J, Baker D, Visel A, Ouzounis CA, Ovchinnikov S, Buluç A, Kyrpides NC. Pavlopoulos GA, et al. Among authors: call l. Nature. 2023 Oct;622(7983):594-602. doi: 10.1038/s41586-023-06583-7. Epub 2023 Oct 11. Nature. 2023. PMID: 37821698 Free PMC article.
Illuminating the Virosphere Through Global Metagenomics.
Call L, Nayfach S, Kyrpides NC. Call L, et al. Annu Rev Biomed Data Sci. 2021 Jul 20;4:369-391. doi: 10.1146/annurev-biodatasci-012221-095114. Annu Rev Biomed Data Sci. 2021. PMID: 34465172
Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes.
Seshadri R, Roux S, Huber KJ, Wu D, Yu S, Udwary D, Call L, Nayfach S, Hahnke RL, Pukall R, White JR, Varghese NJ, Webb C, Palaniappan K, Reimer LC, Sardà J, Bertsch J, Mukherjee S, Reddy TBK, Hajek PP, Huntemann M, Chen IA, Spunde A, Clum A, Shapiro N, Wu ZY, Zhao Z, Zhou Y, Evtushenko L, Thijs S, Stevens V, Eloe-Fadrosh EA, Mouncey NJ, Yoshikuni Y, Whitman WB, Klenk HP, Woyke T, Göker M, Kyrpides NC, Ivanova NN. Seshadri R, et al. Among authors: call l. Cell Genom. 2022 Nov 11;2(12):100213. doi: 10.1016/j.xgen.2022.100213. eCollection 2022 Dec 14. Cell Genom. 2022. PMID: 36778052 Free PMC article.
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.
Nayfach S, Páez-Espino D, Call L, Low SJ, Sberro H, Ivanova NN, Proal AD, Fischbach MA, Bhatt AS, Hugenholtz P, Kyrpides NC. Nayfach S, et al. Among authors: call l. Nat Microbiol. 2021 Jul;6(7):960-970. doi: 10.1038/s41564-021-00928-6. Epub 2021 Jun 24. Nat Microbiol. 2021. PMID: 34168315 Free PMC article.
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.
Camargo AP, Call L, Roux S, Nayfach S, Huntemann M, Palaniappan K, Ratner A, Chu K, Mukherjeep S, Reddy TBK, Chen IA, Ivanova NN, Eloe-Fadrosh EA, Woyke T, Baltrus DA, Castañeda-Barba S, de la Cruz F, Funnell BE, Hall JPJ, Mukhopadhyay A, Rocha EPC, Stalder T, Top E, Kyrpides NC. Camargo AP, et al. Among authors: call l. Nucleic Acids Res. 2024 Jan 5;52(D1):D164-D173. doi: 10.1093/nar/gkad964. Nucleic Acids Res. 2024. PMID: 37930866 Free PMC article.
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
Camargo AP, Nayfach S, Chen IA, Palaniappan K, Ratner A, Chu K, Ritter SJ, Reddy TBK, Mukherjee S, Schulz F, Call L, Neches RY, Woyke T, Ivanova NN, Eloe-Fadrosh EA, Kyrpides NC, Roux S. Camargo AP, et al. Among authors: call l. Nucleic Acids Res. 2023 Jan 6;51(D1):D733-D743. doi: 10.1093/nar/gkac1037. Nucleic Acids Res. 2023. PMID: 36399502 Free PMC article.
Parenteral lipids shape gut bile acid pools and microbiota profiles in the prevention of cholestasis in preterm pigs.
Call L, Molina T, Stoll B, Guthrie G, Chacko S, Plat J, Robinson J, Lin S, Vonderohe C, Mohammad M, Kunichoff D, Cruz S, Lau P, Premkumar M, Nielsen J, Fang Z, Olutoye O, Thymann T, Britton R, Sangild P, Burrin D. Call L, et al. J Lipid Res. 2020 Jul;61(7):1038-1051. doi: 10.1194/jlr.RA120000652. Epub 2020 Apr 29. J Lipid Res. 2020. PMID: 32350078 Free PMC article.
New generation lipid emulsions increase brain DHA and improve body composition, but not short-term neurodevelopment in parenterally-fed preterm piglets.
Molina TL, Stoll B, Mohammad M, Mohila CA, Call L, Cui L, Guthrie G, Kunichoff D, Lin S, Welch-Jernigan R, Nielsen J, Premkumar M, Robinson J, Smith V, Teets H, Obelitz-Ryom K, Hagan J, Cruz S, Lau P, Puyau M, Shypailo R, Manjarin R, Butte N, Fang Z, Olutoye O, Thymann T, Sangild P, Burrin D. Molina TL, et al. Among authors: call l. Brain Behav Immun. 2020 Mar;85:46-56. doi: 10.1016/j.bbi.2019.04.031. Epub 2019 Apr 24. Brain Behav Immun. 2020. PMID: 31026499 Free PMC article.
14 results