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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.
Bioinformatics. 2015 May 15;31(10):1674-6. doi: 10.1093/bioinformatics/btv033. Epub 2015 Jan 20.
Bioinformatics. 2015.
PMID: 25609793
Free article.
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices.
Li D, Luo R, Liu CM, Leung CM, Ting HF, Sadakane K, Yamashita H, Lam TW.
Li D, et al. Among authors: sadakane k.
Methods. 2016 Jun 1;102:3-11. doi: 10.1016/j.ymeth.2016.02.020. Epub 2016 Mar 21.
Methods. 2016.
PMID: 27012178
Review.
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An O(m log m)-Time Algorithm for Detecting Superbubbles.
Sung WK, Sadakane K, Shibuya T, Belorkar A, Pyrogova I.
Sung WK, et al. Among authors: sadakane k.
IEEE/ACM Trans Comput Biol Bioinform. 2015 Jul-Aug;12(4):770-7. doi: 10.1109/TCBB.2014.2385696.
IEEE/ACM Trans Comput Biol Bioinform. 2015.
PMID: 26357315
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Linear-time protein 3-D structure searching with insertions and deletions.
Shibuya T, Jansson J, Sadakane K.
Shibuya T, et al. Among authors: sadakane k.
Algorithms Mol Biol. 2010 Jan 4;5:7. doi: 10.1186/1748-7188-5-7.
Algorithms Mol Biol. 2010.
PMID: 20047663
Free PMC article.
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