Karin S. Dorman - Search Results

Year	Number of Results
2002	2
2003	2
2004	1
2005	1
2006	2
2007	3
2008	3
2009	5
2010	5
2011	4
2012	3
2017	6
2018	1
2020	1
2021	3
2022	1
2023	6
2024	1

1

CAPG: comprehensive allopolyploid genotyper.

Kulkarni R, Zhang Y, Cannon SB, Dorman KS. Kulkarni R, et al. Among authors: dorman ks. Bioinformatics. 2023 Jan 1;39(1):btac729. doi: 10.1093/bioinformatics/btac729. Bioinformatics. 2023. PMID: 36367243 Free PMC article.

2

Unsupervised contrastive peak caller for ATAC-seq.

Vu HTH, Zhang Y, Tuteja G, Dorman KS. Vu HTH, et al. Among authors: dorman ks. Genome Res. 2023 Jul;33(7):1133-1144. doi: 10.1101/gr.277677.123. Epub 2023 May 22. Genome Res. 2023. PMID: 37217250 Free PMC article.

3

Rev variation during persistent lentivirus infection.

Carpenter S, Chen WC, Dorman KS. Carpenter S, et al. Among authors: dorman ks. Viruses. 2011 Jan;3(1):1-11. doi: 10.3390/v3010001. Epub 2011 Jan 11. Viruses. 2011. PMID: 21994723 Free PMC article. Review.

4

Nod1-dependent NF-kB activation initiates hematopoietic stem cell specification in response to small Rho GTPases.

Cheng X, Barakat R, Pavani G, Usha MK, Calderon R, Snella E, Gorden A, Zhang Y, Gadue P, French DL, Dorman KS, Fidanza A, Campbell CA, Espin-Palazon R. Cheng X, et al. Among authors: dorman ks. Nat Commun. 2023 Nov 23;14(1):7668. doi: 10.1038/s41467-023-43349-1. Nat Commun. 2023. PMID: 37996457 Free PMC article.

5

Predicting allosteric pockets in protein biological assemblages.

Kumar A, Kaynak BT, Dorman KS, Doruker P, Jernigan RL. Kumar A, et al. Among authors: dorman ks. Bioinformatics. 2023 May 4;39(5):btad275. doi: 10.1093/bioinformatics/btad275. Bioinformatics. 2023. PMID: 37115636 Free PMC article.

6

Coarse-graining protein structures into their dynamic communities with DCI, a dynamic community identifier.

Kumar A, Khade PM, Dorman KS, Jernigan RL. Kumar A, et al. Among authors: dorman ks. Bioinformatics. 2022 May 13;38(10):2727-2733. doi: 10.1093/bioinformatics/btac159. Bioinformatics. 2022. PMID: 35561187 Free PMC article.

7

AmpliCI: a high-resolution model-based approach for denoising Illumina amplicon data.

Peng X, Dorman KS. Peng X, et al. Among authors: dorman ks. Bioinformatics. 2021 Jan 29;36(21):5151-5158. doi: 10.1093/bioinformatics/btaa648. Bioinformatics. 2021. PMID: 32697845 Free PMC article.

8

Accurate estimation of molecular counts from amplicon sequence data with unique molecular identifiers.

Peng X, Dorman KS. Peng X, et al. Among authors: dorman ks. Bioinformatics. 2023 Jan 1;39(1):btad002. doi: 10.1093/bioinformatics/btad002. Bioinformatics. 2023. PMID: 36610988 Free PMC article.

9

An accurate and interpretable model for antimicrobial resistance in pathogenic Escherichia coli from livestock and companion animal species.

Chung HC, Foxx CL, Hicks JA, Stuber TP, Friedberg I, Dorman KS, Harris B. Chung HC, et al. Among authors: dorman ks. PLoS One. 2023 Aug 24;18(8):e0290473. doi: 10.1371/journal.pone.0290473. eCollection 2023. PLoS One. 2023. PMID: 37616210 Free PMC article.

10

Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor.

Velásquez-Zapata V, Elmore JM, Banerjee S, Dorman KS, Wise RP. Velásquez-Zapata V, et al. Among authors: dorman ks. PLoS Comput Biol. 2021 Apr 2;17(4):e1008890. doi: 10.1371/journal.pcbi.1008890. eCollection 2021 Apr. PLoS Comput Biol. 2021. PMID: 33798202 Free PMC article.

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