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Page 1
RNA splicing analysis using heterogeneous and large RNA-seq datasets.
Nat Commun. 2023 Mar 3;14(1):1230. doi: 10.1038/s41467-023-36585-y.
Nat Commun. 2023.
PMID: 36869033
Free PMC article.
ChromoShake: a chromosome dynamics simulator reveals that chromatin loops stiffen centromeric chromatin.
Lawrimore J, Aicher JK, Hahn P, Fulp A, Kompa B, Vicci L, Falvo M, Taylor RM 2nd, Bloom K.
Lawrimore J, et al. Among authors: aicher jk.
Mol Biol Cell. 2016 Jan 1;27(1):153-66. doi: 10.1091/mbc.E15-08-0575. Epub 2015 Nov 4.
Mol Biol Cell. 2016.
PMID: 26538024
Free PMC article.
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Mapping RNA splicing variations in clinically accessible and nonaccessible tissues to facilitate Mendelian disease diagnosis using RNA-seq.
Aicher JK, Jewell P, Vaquero-Garcia J, Barash Y, Bhoj EJ.
Aicher JK, et al.
Genet Med. 2020 Jul;22(7):1181-1190. doi: 10.1038/s41436-020-0780-y. Epub 2020 Mar 30.
Genet Med. 2020.
PMID: 32225167
Free PMC article.
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Enhanced Integrated Gradients: improving interpretability of deep learning models using splicing codes as a case study.
Jha A, K Aicher J, R Gazzara M, Singh D, Barash Y.
Jha A, et al. Among authors: k aicher j.
Genome Biol. 2020 Jun 19;21(1):149. doi: 10.1186/s13059-020-02055-7.
Genome Biol. 2020.
PMID: 32560708
Free PMC article.
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Random Forest Analysis of Untargeted Metabolomics Data Suggests Increased Use of Omega Fatty Acid Oxidation Pathway in Drosophila Melanogaster Larvae Fed a Medium Chain Fatty Acid Rich High-Fat Diet.
Oza VH, Aicher JK, Reed LK.
Oza VH, et al. Among authors: aicher jk.
Metabolites. 2018 Dec 31;9(1):5. doi: 10.3390/metabo9010005.
Metabolites. 2018.
PMID: 30602659
Free PMC article.
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