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Year Number of Results
2013 1
2014 1
2015 5
2016 4
2017 2
2018 9
2019 14
2020 14
2021 8
2022 13
2023 7
2024 1

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75 results

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Page 1
Pangenome Flux Balance Analysis Toward Panphenomes.
Norsigian CJ, Fang X, Palsson BO, Monk JM. Norsigian CJ, et al. Among authors: monk jm. 2020 May 1. In: Tettelin H, Medini D, editors. The Pangenome: Diversity, Dynamics and Evolution of Genomes [Internet]. Cham (CH): Springer; 2020. 2020 May 1. In: Tettelin H, Medini D, editors. The Pangenome: Diversity, Dynamics and Evolution of Genomes [Internet]. Cham (CH): Springer; 2020. PMID: 32633918 Free Books & Documents. Review.
Mathematical models to study the biology of pathogens and the infectious diseases they cause.
Xavier JB, Monk JM, Poudel S, Norsigian CJ, Sastry AV, Liao C, Bento J, Suchard MA, Arrieta-Ortiz ML, Peterson EJR, Baliga NS, Stoeger T, Ruffin F, Richardson RAK, Gao CA, Horvath TD, Haag AM, Wu Q, Savidge T, Yeaman MR. Xavier JB, et al. Among authors: monk jm. iScience. 2022 Mar 15;25(4):104079. doi: 10.1016/j.isci.2022.104079. eCollection 2022 Apr 15. iScience. 2022. PMID: 35359802 Free PMC article. Review.
Metabolic features of Gulf War illness.
Naviaux RK, Naviaux JC, Li K, Wang L, Monk JM, Bright AT, Koslik HJ, Ritchie JB, Golomb BA. Naviaux RK, et al. Among authors: monk jm. PLoS One. 2019 Jul 26;14(7):e0219531. doi: 10.1371/journal.pone.0219531. eCollection 2019. PLoS One. 2019. PMID: 31348786 Free PMC article.
MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, García-Jiménez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrgård MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, König M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, Sánchez BJ, Schaap PJ, Malik Sheriff RS, Shoaie S, Sonnenschein N, Teusink B, Vilaça P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C. Lieven C, et al. Among authors: monk jm. Nat Biotechnol. 2020 Mar;38(3):272-276. doi: 10.1038/s41587-020-0446-y. Nat Biotechnol. 2020. PMID: 32123384 Free PMC article. No abstract available.
Systems Biology and Pangenome of Salmonella O-Antigens.
Seif Y, Monk JM, Machado H, Kavvas E, Palsson BO. Seif Y, et al. Among authors: monk jm. mBio. 2019 Aug 27;10(4):e01247-19. doi: 10.1128/mBio.01247-19. mBio. 2019. PMID: 31455646 Free PMC article.
High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies.
Broddrick JT, Szubin R, Norsigian CJ, Monk JM, Palsson BO, Parenteau MN. Broddrick JT, et al. Among authors: monk jm. Front Microbiol. 2020 Nov 12;11:596626. doi: 10.3389/fmicb.2020.596626. eCollection 2020. Front Microbiol. 2020. PMID: 33281796 Free PMC article.
75 results