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Page 1
A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses.
Kutnjak D, Tamisier L, Adams I, Boonham N, Candresse T, Chiumenti M, De Jonghe K, Kreuze JF, Lefebvre M, Silva G, Malapi-Wight M, Margaria P, Mavrič Pleško I, McGreig S, Miozzi L, Remenant B, Reynard JS, Rollin J, Rott M, Schumpp O, Massart S, Haegeman A. Kutnjak D, et al. Among authors: rollin j. Microorganisms. 2021 Apr 14;9(4):841. doi: 10.3390/microorganisms9040841. Microorganisms. 2021. PMID: 33920047 Free PMC article. Review.
Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies.
Rollin J, Bester R, Brostaux Y, Caglayan K, De Jonghe K, Eichmeier A, Foucart Y, Haegeman A, Koloniuk I, Kominek P, Maree H, Onder S, Posada Céspedes S, Roumi V, Šafářová D, Schumpp O, Ulubas Serce C, Sõmera M, Tamisier L, Vainio E, van der Vlugt RA, Massart S. Rollin J, et al. PeerJ. 2023 Aug 16;11:e15816. doi: 10.7717/peerj.15816. eCollection 2023. PeerJ. 2023. PMID: 37601254 Free PMC article.
Managing the deluge of newly discovered plant viruses and viroids: an optimized scientific and regulatory framework for their characterization and risk analysis.
Fontdevila Pareta N, Khalili M, Maachi A, Rivarez MPS, Rollin J, Salavert F, Temple C, Aranda MA, Boonham N, Botermans M, Candresse T, Fox A, Hernando Y, Kutnjak D, Marais A, Petter F, Ravnikar M, Selmi I, Tahzima R, Trontin C, Wetzel T, Massart S. Fontdevila Pareta N, et al. Among authors: rollin j. Front Microbiol. 2023 May 30;14:1181562. doi: 10.3389/fmicb.2023.1181562. eCollection 2023. Front Microbiol. 2023. PMID: 37323908 Free PMC article.
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis.
Vallenet D, Calteau A, Dubois M, Amours P, Bazin A, Beuvin M, Burlot L, Bussell X, Fouteau S, Gautreau G, Lajus A, Langlois J, Planel R, Roche D, Rollin J, Rouy Z, Sabatet V, Médigue C. Vallenet D, et al. Among authors: rollin j. Nucleic Acids Res. 2020 Jan 8;48(D1):D579-D589. doi: 10.1093/nar/gkz926. Nucleic Acids Res. 2020. PMID: 31647104 Free PMC article.
MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.
Médigue C, Calteau A, Cruveiller S, Gachet M, Gautreau G, Josso A, Lajus A, Langlois J, Pereira H, Planel R, Roche D, Rollin J, Rouy Z, Vallenet D. Médigue C, et al. Among authors: rollin j. Brief Bioinform. 2019 Jul 19;20(4):1071-1084. doi: 10.1093/bib/bbx113. Brief Bioinform. 2019. PMID: 28968784 Free PMC article.
Going beyond consensus genome sequences: An innovative SNP-based methodology reconstructs different Ugandan cassava brown streak virus haplotypes at a nationwide scale in Rwanda.
Nyirakanani C, Tamisier L, Bizimana JP, Rollin J, Nduwumuremyi A, Bigirimana VP, Selmi I, Lasois L, Vanderschuren H, Massart S. Nyirakanani C, et al. Among authors: rollin j. Virus Evol. 2023 Aug 24;9(2):vead053. doi: 10.1093/ve/vead053. eCollection 2023. Virus Evol. 2023. PMID: 37692897 Free PMC article.