Jakub W. Wojciechowski - Search Results

Year	Number of Results
2019	1
2020	1
2021	2
2022	3
2023	3
2024	1

1

AmyloGraph: a comprehensive database of amyloid-amyloid interactions.

Burdukiewicz M, Rafacz D, Barbach A, Hubicka K, Bąkała L, Lassota A, Stecko J, Szymańska N, Wojciechowski JW, Kozakiewicz D, Szulc N, Chilimoniuk J, Jęśkowiak I, Gąsior-Głogowska M, Kotulska M. Burdukiewicz M, et al. Among authors: wojciechowski jw. Nucleic Acids Res. 2023 Jan 6;51(D1):D352-D357. doi: 10.1093/nar/gkac882. Nucleic Acids Res. 2023. PMID: 36243982 Free PMC article.

2

PACT - Prediction of amyloid cross-interaction by threading.

Wojciechowski JW, Szczurek W, Szulc N, Szefczyk M, Kotulska M. Wojciechowski JW, et al. Sci Rep. 2023 Dec 14;13(1):22268. doi: 10.1038/s41598-023-48886-9. Sci Rep. 2023. PMID: 38097650 Free PMC article.

3

The role of tandem repeats in bacterial functional amyloids.

Nowakowska AW, Wojciechowski JW, Szulc N, Kotulska M. Nowakowska AW, et al. Among authors: wojciechowski jw. J Struct Biol. 2023 Sep;215(3):108002. doi: 10.1016/j.jsb.2023.108002. Epub 2023 Jul 22. J Struct Biol. 2023. PMID: 37482232 Free article.

4

Bioinformatics Methods in Predicting Amyloid Propensity of Peptides and Proteins.

Kotulska M, Wojciechowski JW. Kotulska M, et al. Among authors: wojciechowski jw. Methods Mol Biol. 2022;2340:1-15. doi: 10.1007/978-1-0716-1546-1_1. Methods Mol Biol. 2022. PMID: 35167067

5

Exploring a diverse world of effector domains and amyloid signaling motifs in fungal NLR proteins.

Wojciechowski JW, Tekoglu E, Gąsior-Głogowska M, Coustou V, Szulc N, Szefczyk M, Kopaczyńska M, Saupe SJ, Dyrka W. Wojciechowski JW, et al. PLoS Comput Biol. 2022 Dec 21;18(12):e1010787. doi: 10.1371/journal.pcbi.1010787. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36542665 Free PMC article.

6

A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins.

Kamal M, Tokmakjian L, Knox J, Mastrangelo P, Ji J, Cai H, Wojciechowski JW, Hughes MP, Takács K, Chu X, Pei J, Grolmusz V, Kotulska M, Forman-Kay JD, Roy PJ. Kamal M, et al. Among authors: wojciechowski jw. Elife. 2022 Oct 19;11:e79396. doi: 10.7554/eLife.79396. Elife. 2022. PMID: 36259463 Free PMC article.

7

Bioinformatics methods for identification of amyloidogenic peptides show robustness to misannotated training data.

Szulc N, Burdukiewicz M, Gąsior-Głogowska M, Wojciechowski JW, Chilimoniuk J, Mackiewicz P, Šneideris T, Smirnovas V, Kotulska M. Szulc N, et al. Among authors: wojciechowski jw. Sci Rep. 2021 Apr 26;11(1):8934. doi: 10.1038/s41598-021-86530-6. Sci Rep. 2021. PMID: 33903613 Free PMC article.

8

Variability of Amyloid Propensity in Imperfect Repeats of CsgA Protein of Salmonella enterica and Escherichia coli.

Szulc N, Gąsior-Głogowska M, Wojciechowski JW, Szefczyk M, Żak AM, Burdukiewicz M, Kotulska M. Szulc N, et al. Among authors: wojciechowski jw. Int J Mol Sci. 2021 May 12;22(10):5127. doi: 10.3390/ijms22105127. Int J Mol Sci. 2021. PMID: 34066237 Free PMC article.

9

Structural effects of charge destabilization and amino acid substitutions in amyloid fragments of CsgA.

Szulc N, Gąsior-Głogowska M, Żyłka P, Szefczyk M, Wojciechowski JW, Żak AM, Dyrka W, Kaczorowska A, Burdukiewicz M, Tarek M, Kotulska M. Szulc N, et al. Among authors: wojciechowski jw. Spectrochim Acta A Mol Biomol Spectrosc. 2024 May 15;313:124094. doi: 10.1016/j.saa.2024.124094. Epub 2024 Mar 6. Spectrochim Acta A Mol Biomol Spectrosc. 2024. PMID: 38503257

10

PATH - Prediction of Amyloidogenicity by Threading and Machine Learning.

Wojciechowski JW, Kotulska M. Wojciechowski JW, et al. Sci Rep. 2020 May 7;10(1):7721. doi: 10.1038/s41598-020-64270-3. Sci Rep. 2020. PMID: 32382058 Free PMC article.

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