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2013 1
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Page 1
Pragmatic Coarse-Graining of Proteins: Models and Applications.
Borges-Araújo L, Patmanidis I, Singh AP, Santos LHS, Sieradzan AK, Vanni S, Czaplewski C, Pantano S, Shinoda W, Monticelli L, Liwo A, Marrink SJ, Souza PCT. Borges-Araújo L, et al. Among authors: patmanidis i. J Chem Theory Comput. 2023 Oct 24;19(20):7112-7135. doi: 10.1021/acs.jctc.3c00733. Epub 2023 Oct 3. J Chem Theory Comput. 2023. PMID: 37788237 Review.
Watching Molecular Nanotubes Self-Assemble in Real Time.
Manrho M, Krishnaswamy SR, Kriete B, Patmanidis I, de Vries AH, Marrink SJ, Jansen TLC, Knoester J, Pshenichnikov MS. Manrho M, et al. Among authors: patmanidis i. J Am Chem Soc. 2023 Oct 18;145(41):22494-22503. doi: 10.1021/jacs.3c07103. Epub 2023 Oct 6. J Am Chem Soc. 2023. PMID: 37800477 Free PMC article.
Fluorinated Alcohols' Effects on Lipid Bilayer Properties.
Zhang M, Peyear T, Patmanidis I, Greathouse DV, Marrink SJ, Andersen OS, Ingólfsson HI. Zhang M, et al. Among authors: patmanidis i. Biophys J. 2018 Aug 21;115(4):679-689. doi: 10.1016/j.bpj.2018.07.010. Epub 2018 Aug 1. Biophys J. 2018. PMID: 30077334 Free PMC article.
Martini 3: a general purpose force field for coarse-grained molecular dynamics.
Souza PCT, Alessandri R, Barnoud J, Thallmair S, Faustino I, Grünewald F, Patmanidis I, Abdizadeh H, Bruininks BMH, Wassenaar TA, Kroon PC, Melcr J, Nieto V, Corradi V, Khan HM, Domański J, Javanainen M, Martinez-Seara H, Reuter N, Best RB, Vattulainen I, Monticelli L, Periole X, Tieleman DP, de Vries AH, Marrink SJ. Souza PCT, et al. Among authors: patmanidis i. Nat Methods. 2021 Apr;18(4):382-388. doi: 10.1038/s41592-021-01098-3. Epub 2021 Mar 29. Nat Methods. 2021. PMID: 33782607
Molecular versus Excitonic Disorder in Individual Artificial Light-Harvesting Systems.
Kriete B, Bondarenko AS, Alessandri R, Patmanidis I, Krasnikov VV, Jansen TLC, Marrink SJ, Knoester J, Pshenichnikov MS. Kriete B, et al. Among authors: patmanidis i. J Am Chem Soc. 2020 Oct 21;142(42):18073-18085. doi: 10.1021/jacs.0c07392. Epub 2020 Oct 9. J Am Chem Soc. 2020. PMID: 32985187 Free PMC article.
13 results