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DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis.
Clin Epigenetics. 2019 Dec 12;11(1):193. doi: 10.1186/s13148-019-0795-x.
Clin Epigenetics. 2019.
PMID: 31831061
Free PMC article.
Review.
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.
Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Chèneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A.
Rauluseviciute I, et al.
Nucleic Acids Res. 2024 Jan 5;52(D1):D174-D182. doi: 10.1093/nar/gkad1059.
Nucleic Acids Res. 2024.
PMID: 37962376
Free PMC article.
Item in Clipboard
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.
Castro-Mondragon JA, Riudavets-Puig R, Rauluseviciute I, Lemma RB, Turchi L, Blanc-Mathieu R, Lucas J, Boddie P, Khan A, Manosalva Pérez N, Fornes O, Leung TY, Aguirre A, Hammal F, Schmelter D, Baranasic D, Ballester B, Sandelin A, Lenhard B, Vandepoele K, Wasserman WW, Parcy F, Mathelier A.
Castro-Mondragon JA, et al. Among authors: rauluseviciute i.
Nucleic Acids Res. 2022 Jan 7;50(D1):D165-D173. doi: 10.1093/nar/gkab1113.
Nucleic Acids Res. 2022.
PMID: 34850907
Free PMC article.
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DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation.
Rauluseviciute I, Drabløs F, Rye MB.
Rauluseviciute I, et al.
BMC Med Genomics. 2020 Jan 8;13(1):6. doi: 10.1186/s12920-020-0657-6.
BMC Med Genomics. 2020.
PMID: 31914996
Free PMC article.
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Promoter Methylation of PRKCB, ADAMTS12, and NAALAD2 Is Specific to Prostate Cancer and Predicts Biochemical Disease Recurrence.
Daniunaite K, Bakavicius A, Zukauskaite K, Rauluseviciute I, Lazutka JR, Ulys A, Jankevicius F, Jarmalaite S.
Daniunaite K, et al. Among authors: rauluseviciute i.
Int J Mol Sci. 2021 Jun 5;22(11):6091. doi: 10.3390/ijms22116091.
Int J Mol Sci. 2021.
PMID: 34198725
Free PMC article.
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