Hiraku Oshima - Search Results

Year	Number of Results
2007	1
2009	1
2010	1
2011	3
2012	2
2013	2
2014	1
2015	5
2016	3
2018	1
2019	6
2020	3
2021	4
2022	3
2024	0

1

Replica-Exchange Methods for Biomolecular Simulations.

Sugita Y, Kamiya M, Oshima H, Re S. Sugita Y, et al. Among authors: oshima h. Methods Mol Biol. 2019;2022:155-177. doi: 10.1007/978-1-4939-9608-7_7. Methods Mol Biol. 2019. PMID: 31396903

2

Use of multistate Bennett acceptance ratio method for free-energy calculations from enhanced sampling and free-energy perturbation.

Matsunaga Y, Kamiya M, Oshima H, Jung J, Ito S, Sugita Y. Matsunaga Y, et al. Among authors: oshima h. Biophys Rev. 2022 Dec 14;14(6):1503-1512. doi: 10.1007/s12551-022-01030-9. eCollection 2022 Dec. Biophys Rev. 2022. PMID: 36659993 Free PMC article. Review.

3

Modified Hamiltonian in FEP Calculations for Reducing the Computational Cost of Electrostatic Interactions.

Oshima H, Sugita Y. Oshima H, et al. J Chem Inf Model. 2022 Jun 13;62(11):2846-2856. doi: 10.1021/acs.jcim.1c01532. Epub 2022 May 31. J Chem Inf Model. 2022. PMID: 35639709 Free PMC article.

4

Population Shift Mechanism for Partial Agonism of AMPA Receptor.

Oshima H, Re S, Sakakura M, Takahashi H, Sugita Y. Oshima H, et al. Biophys J. 2019 Jan 8;116(1):57-68. doi: 10.1016/j.bpj.2018.11.3122. Epub 2018 Nov 29. Biophys J. 2019. PMID: 30573176 Free PMC article.

5

Reduced efficacy of a Src kinase inhibitor in crowded protein solution.

Kasahara K, Re S, Nawrocki G, Oshima H, Mishima-Tsumagari C, Miyata-Yabuki Y, Kukimoto-Niino M, Yu I, Shirouzu M, Feig M, Sugita Y. Kasahara K, et al. Among authors: oshima h. Nat Commun. 2021 Jul 2;12(1):4099. doi: 10.1038/s41467-021-24349-5. Nat Commun. 2021. PMID: 34215742 Free PMC article.

6

Prediction of Protein-Ligand Binding Pose and Affinity Using the gREST+FEP Method.

Oshima H, Re S, Sugita Y. Oshima H, et al. J Chem Inf Model. 2020 Nov 23;60(11):5382-5394. doi: 10.1021/acs.jcim.0c00338. Epub 2020 Aug 17. J Chem Inf Model. 2020. PMID: 32786707

7

Effects of sugars on the thermal stability of a protein.

Oshima H, Kinoshita M. Oshima H, et al. J Chem Phys. 2013 Jun 28;138(24):245101. doi: 10.1063/1.4811287. J Chem Phys. 2013. PMID: 23822280

8

Modified Protein-Water Interactions in CHARMM36m for Thermodynamics and Kinetics of Proteins in Dilute and Crowded Solutions.

Matsubara D, Kasahara K, Dokainish HM, Oshima H, Sugita Y. Matsubara D, et al. Among authors: oshima h. Molecules. 2022 Sep 5;27(17):5726. doi: 10.3390/molecules27175726. Molecules. 2022. PMID: 36080494 Free PMC article.

9

Mosaic Cooperativity in Slow Polypeptide Topological Isomerization Revealed by Residue-Specific NMR Thermodynamic Analysis.

Fujinami D, Motomura H, Oshima H, Mahin AA, Elsayed KM, Zendo T, Sugita Y, Sonomoto K, Kohda D. Fujinami D, et al. Among authors: oshima h. J Phys Chem Lett. 2020 Mar 5;11(5):1934-1939. doi: 10.1021/acs.jpclett.9b03591. Epub 2020 Feb 25. J Phys Chem Lett. 2020. PMID: 32067463

10

Replica-Exchange Umbrella Sampling Combined with Gaussian Accelerated Molecular Dynamics for Free-Energy Calculation of Biomolecules.

Oshima H, Re S, Sugita Y. Oshima H, et al. J Chem Theory Comput. 2019 Oct 8;15(10):5199-5208. doi: 10.1021/acs.jctc.9b00761. Epub 2019 Sep 27. J Chem Theory Comput. 2019. PMID: 31539245

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Results by year

Text availability

Article attribute

Article type

Publication date

34 results

Results by year

Search Page

Filters

My NCBI Filters

Results by year

Text availability

Article attribute

Article type

Publication date

Search Results

34 results

Results by year