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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1946 1
1954 1
1957 2
1964 1
1967 1
1973 1
1982 1
1987 1
1988 1
1989 1
1990 2
1991 1
1992 2
1993 1
1997 1
1998 4
1999 1
2000 1
2001 2
2002 3
2004 3
2005 2
2006 5
2008 3
2009 8
2010 8
2011 6
2012 12
2013 11
2014 13
2015 11
2016 9
2017 8
2018 14
2019 10
2020 12
2021 17
2022 17
2023 19
2024 10

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207 results

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The following term was not found in PubMed: Faredj
Page 1
Protecting lemurs--response.
Schwitzer C, Chikhi L, Donati G, Irwin M, Johnson SE, Mittermeier RA, Peacock H, Ratsimbazafy J, Razafindramanana J, Louis EE Jr, Colquhoun IC, Tinsman J, Dolch R, Lafleur M, Nash S, Patel E, Randrianambinina B, Rasolofoharivelo T, Wright PC. Schwitzer C, et al. Science. 2014 Apr 25;344(6182):358-60. doi: 10.1126/science.344.6182.358-c. Science. 2014. PMID: 24763571 No abstract available.
Petabase-Scale Homology Search for Structure Prediction.
Lee S, Kim G, Karin EL, Mirdita M, Park S, Chikhi R, Babaian A, Kryshtafovych A, Steinegger M. Lee S, et al. Cold Spring Harb Perspect Biol. 2024 May 2;16(5):a041465. doi: 10.1101/cshperspect.a041465. Cold Spring Harb Perspect Biol. 2024. PMID: 38316555 Review.
Buffering updates enables efficient dynamic de Bruijn graphs.
Alanko J, Alipanahi B, Settle J, Boucher C, Gagie T. Alanko J, et al. Comput Struct Biotechnol J. 2021 Jul 6;19:4067-4078. doi: 10.1016/j.csbj.2021.06.047. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34377371 Free PMC article.
., 2020b; Iqbal et al., 2012), and storage of assembled genomes (Chikhi et al., 2016). For this reason, there have been over a dozen methods for building and representing the de Bruijn graph and its variants in a space and time efficient manner. ...
., 2020b; Iqbal et al., 2012), and storage of assembled genomes (Chikhi et al., 2016). For this reason, there have been over a dozen …
Computational pan-genomics: status, promises and challenges.
Computational Pan-Genomics Consortium. Computational Pan-Genomics Consortium. Brief Bioinform. 2018 Jan 1;19(1):118-135. doi: 10.1093/bib/bbw089. Brief Bioinform. 2018. PMID: 27769991 Free PMC article. Review.
Petascale Homology Search for Structure Prediction.
Lee S, Kim G, Karin EL, Mirdita M, Park S, Chikhi R, Babaian A, Kryshtafovych A, Steinegger M. Lee S, et al. bioRxiv [Preprint]. 2023 Jul 11:2023.07.10.548308. doi: 10.1101/2023.07.10.548308. bioRxiv. 2023. PMID: 37503235 Free PMC article. Updated. Preprint.
Disk compression of k-mer sets.
Rahman A, Chikhi R, Medvedev P. Rahman A, et al. Algorithms Mol Biol. 2021 Jun 21;16(1):10. doi: 10.1186/s13015-021-00192-7. Algorithms Mol Biol. 2021. PMID: 34154632 Free PMC article.
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, Dabrowski PW, Darling AE, Egan R, Eskin E, Georganas E, Goltsman E, Gray MA, Hansen LH, Hofmeyr S, Huang P, Irber L, Jia H, Jørgensen TS, Kieser SD, Klemetsen T, Kola A, Kolmogorov M, Korobeynikov A, Kwan J, LaPierre N, Lemaitre C, Li C, Limasset A, Malcher-Miranda F, Mangul S, Marcelino VR, Marchet C, Marijon P, Meleshko D, Mende DR, Milanese A, Nagarajan N, Nissen J, Nurk S, Oliker L, Paoli L, Peterlongo P, Piro VC, Porter JS, Rasmussen S, Rees ER, Reinert K, Renard B, Robertsen EM, Rosen GL, Ruscheweyh HJ, Sarwal V, Segata N, Seiler E, Shi L, Sun F, Sunagawa S, Sørensen SJ, Thomas A, Tong C, Trajkovski M, Tremblay J, Uritskiy G, Vicedomini R, Wang Z, Wang Z, Wang Z, Warren A, Willassen NP, Yelick K, You R, Zeller G, Zhao Z, Zhu S, Zhu J, Garrido-Oter R, Gastmeier P, Hacquard S, Häußler S, Khaledi A, Maechler F, Mesny F, Radutoiu S, Schulze-Lefert P, Smit N, Strowig T, Bremges A, Sczyrba A, McHardy AC. Meyer F, et al. Nat Methods. 2022 Apr;19(4):429-440. doi: 10.1038/s41592-022-01431-4. Epub 2022 Apr 8. Nat Methods. 2022. PMID: 35396482 Free PMC article.
Petabase-scale sequence alignment catalyses viral discovery.
Edgar RC, Taylor B, Lin V, Altman T, Barbera P, Meleshko D, Lohr D, Novakovsky G, Buchfink B, Al-Shayeb B, Banfield JF, de la Peña M, Korobeynikov A, Chikhi R, Babaian A. Edgar RC, et al. Nature. 2022 Feb;602(7895):142-147. doi: 10.1038/s41586-021-04332-2. Epub 2022 Jan 26. Nature. 2022. PMID: 35082445
207 results