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Computational Analysis of Transposable Elements and CircRNAs in Plants.
Oliveira LS, Patera AC, Domingues DS, Sanches DS, Lopes FM, Bugatti PH, Saito PTM, Maracaja-Coutinho V, Durham AM, Paschoal AR. Oliveira LS, et al. Among authors: sanches ds. Methods Mol Biol. 2021;2362:147-172. doi: 10.1007/978-1-0716-1645-1_9. Methods Mol Biol. 2021. PMID: 34195962
MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes.
Nata'ala MK, Avila Santos AP, Coelho Kasmanas J, Bartholomäus A, Saraiva JP, Godinho Silva S, Keller-Costa T, Costa R, Gomes NCM, Ponce de Leon Ferreira de Carvalho AC, Stadler PF, Sipoli Sanches D, Nunes da Rocha U. Nata'ala MK, et al. Among authors: sipoli sanches d. Environ Microbiome. 2022 Nov 18;17(1):57. doi: 10.1186/s40793-022-00449-7. Environ Microbiome. 2022. PMID: 36401317 Free PMC article.
Draft Genome Sequence of Brevibacillus brevis LABIM17, a Biotechnologically Important Antimicrobial-Producing Bacterium.
de Medeiros Chagas L, Teixeira GM, Mosela M, de Oliveira JP, Nicoletto MLA, Bertê R, da Silva DV, Sanches DS, Brancher JD, Padua UP, de Oliveira AG. de Medeiros Chagas L, et al. Among authors: sanches ds. Microbiol Resour Announc. 2022 Mar 17;11(3):e0000622. doi: 10.1128/mra.00006-22. Epub 2022 Feb 22. Microbiol Resour Announc. 2022. PMID: 35191747 Free PMC article.
The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes.
Avila Santos AP, Kabiru Nata'ala M, Kasmanas JC, Bartholomäus A, Keller-Costa T, Jurburg SD, Tal T, Camarinha-Silva A, Saraiva JP, Ponce de Leon Ferreira de Carvalho AC, Stadler PF, Sipoli Sanches D, Rocha U. Avila Santos AP, et al. Among authors: sipoli sanches d. Anim Microbiome. 2023 Oct 5;5(1):48. doi: 10.1186/s42523-023-00267-3. Anim Microbiome. 2023. PMID: 37798675 Free PMC article.