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2024 3

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Page 1
Detecting Selection in the HIV-1 Genome during Sexual Transmission Events.
Seifert D, Joos B, Braun DL, Oberle CS, Schenkel CD, Kuster H, Grube C, Böni J, Yerly S, Aubert V, Klimkait T, Günthard HF, Beerenwinkel N, Metzner KJ, On Behalf Of The Swiss Hiv Cohort Study. Seifert D, et al. Among authors: schenkel cd. Viruses. 2022 Feb 16;14(2):406. doi: 10.3390/v14020406. Viruses. 2022. PMID: 35215999 Free PMC article.
Mycobacterium tuberculosis infection associated immune perturbations correlate with antiretroviral immunity.
Tepekule Mueller B, Joerimann L, Schenkel CD, Opitz L, Tschumi J, Wolfensberger R, Neumann K, Kusejko K, Zeeb M, Boeck L, Kaelin M, Notter J, Furrer H, Hoffmann M, Hirsch HH, Calmy A, Cavassini M, Labhardt ND, Bernasconi E, Metzner KJ, Braun DL, Guenthard HF, Kouyos RD, Duffy F, Nemeth J; Swiss HIV Cohort Study. Tepekule Mueller B, et al. Among authors: schenkel cd. bioRxiv [Preprint]. 2024 Mar 3:2023.07.14.548872. doi: 10.1101/2023.07.14.548872. bioRxiv. 2024. PMID: 37649906 Free PMC article. Preprint.
Genetic diversity from proviral DNA as a proxy for time since HIV-1 infection.
Zeeb M, Frischknecht P, Huber M, Schenkel CD, Neumann K, Leeman C, Notter J, Rauch A, Stöckle M, Cavassini M, Bernasconi E, Braun DL, Günthard HF, Metzner KJ, Kouyos RD. Zeeb M, et al. Among authors: schenkel cd. J Infect Dis. 2024 Mar 20:jiae149. doi: 10.1093/infdis/jiae149. Online ahead of print. J Infect Dis. 2024. PMID: 38507572 Free article.
Absence of Proviral Human Immunodeficiency Virus (HIV) Type 1 Evolution in Early-Treated Individuals With HIV Switching to Dolutegravir Monotherapy During 48 Weeks.
Jörimann L, Tschumi J, Zeeb M, Leemann C, Schenkel CD, Neumann K, Chaudron SE, Zaheri M, Frischknecht P, Neuner-Jehle N, Kuster H, Braun DL, Grube C, Kouyos R, Metzner KJ, Günthard HF; Swiss HIV Cohort Study (SHCS). Jörimann L, et al. Among authors: schenkel cd. J Infect Dis. 2023 Oct 3;228(7):907-918. doi: 10.1093/infdis/jiad292. J Infect Dis. 2023. PMID: 37498738 Free PMC article.
Prevalence of HIV-1 drug resistance mutations in proviral DNA in the Swiss HIV Cohort Study, a retrospective study from 1995 to 2018.
Jaha B, Schenkel CD, Jörimann L, Huber M, Zaheri M, Neumann K, Leemann C, Calmy A, Cavassini M, Kouyos RD, Günthard HF, Metzner KJ; Swiss HIV Cohort Study. Jaha B, et al. Among authors: schenkel cd. J Antimicrob Chemother. 2023 Sep 5;78(9):2323-2334. doi: 10.1093/jac/dkad240. J Antimicrob Chemother. 2023. PMID: 37545164 Free PMC article.
Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs.
Oberle CS, Joos B, Rusert P, Campbell NK, Beauparlant D, Kuster H, Weber J, Schenkel CD, Scherrer AU, Magnus C, Kouyos R, Rieder P, Niederöst B, Braun DL, Pavlovic J, Böni J, Yerly S, Klimkait T, Aubert V, Trkola A, Metzner KJ, Günthard HF; Swiss HIV Cohort Study (SHCS). Oberle CS, et al. Among authors: schenkel cd. Retrovirology. 2016 Sep 5;13(1):62. doi: 10.1186/s12977-016-0299-0. Retrovirology. 2016. PMID: 27595568 Free PMC article.
Viral Diversity Based on Next-Generation Sequencing of HIV-1 Provides Precise Estimates of Infection Recency and Time Since Infection.
Carlisle LA, Turk T, Kusejko K, Metzner KJ, Leemann C, Schenkel CD, Bachmann N, Posada S, Beerenwinkel N, Böni J, Yerly S, Klimkait T, Perreau M, Braun DL, Rauch A, Calmy A, Cavassini M, Battegay M, Vernazza P, Bernasconi E, Günthard HF, Kouyos RD; Swiss HIV Cohort Study. Carlisle LA, et al. Among authors: schenkel cd. J Infect Dis. 2019 Jun 19;220(2):254-265. doi: 10.1093/infdis/jiz094. J Infect Dis. 2019. PMID: 30835266