Critical Factors in Human Antizymes that Determine the Differential Binding, Inhibition, and Degradation of Human Ornithine Decarboxylase

Biomolecules. 2019 Dec 12;9(12):864. doi: 10.3390/biom9120864.

Abstract

Antizyme (AZ) is a protein that negatively regulates ornithine decarboxylase (ODC). AZ achieves this inhibition by binding to ODC to produce AZ-ODC heterodimers, abolishing enzyme activity and targeting ODC for degradation by the 26S proteasome. In this study, we focused on the biomolecular interactions between the C-terminal domain of AZ (AZ95-228) and ODC to identify the functional elements of AZ that are essential for binding, inhibiting and degrading ODC, and we also identified the crucial factors governing the differential binding and inhibition ability of AZ isoforms toward ODC. Based on the ODC inhibition and AZ-ODC binding studies, we demonstrated that amino acid residues reside within the α1 helix, β5 and β6 strands, and connecting loop between β6 and α2 (residues 142-178), which is the posterior part of AZ95-228, play crucial roles in ODC binding and inhibition. We also identified the essential elements determining the ODC-degradative activity of AZ; amino acid residues within the anterior part of AZ95-228 (residues 120-145) play crucial roles in AZ-mediated ODC degradation. Finally, we identified the crucial factors that govern the differential binding and inhibition of AZ isoforms toward ODC. Mutagenesis studies of AZ1 and AZ3 and their binding and inhibition revealed that the divergence of amino acid residues 124, 150, 166, 171, and 179 results in the differential abilities of AZ1 and AZ3 in the binding and inhibition of ODC.

Keywords: AZ isoform; binding affinity; protein–protein interaction; ubiquitin-independent degradation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites / drug effects
  • Humans
  • Ornithine Decarboxylase / metabolism*
  • Ornithine Decarboxylase Inhibitors / chemistry
  • Ornithine Decarboxylase Inhibitors / metabolism
  • Ornithine Decarboxylase Inhibitors / pharmacology*
  • Proteins / isolation & purification
  • Proteins / metabolism*
  • Proteolysis / drug effects*

Substances

  • Ornithine Decarboxylase Inhibitors
  • Proteins
  • ornithine decarboxylase antizyme
  • Ornithine Decarboxylase