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Page 1
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Nat Commun. 2021 Jun 2;12(1):3297. doi: 10.1038/s41467-021-23143-7.
Nat Commun. 2021.
PMID: 34078885
Free PMC article.
Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski JA, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, Suzuki H, Nishiyori-Sueki H, Frith MC; FANTOM consortium; Chatelain C, Carninci P, de Hoon MJL, Wasserman WW, Bréhélin L, Lecellier CH.
Grapotte M, et al.
Nat Commun. 2022 Mar 1;13(1):1200. doi: 10.1038/s41467-022-28758-y.
Nat Commun. 2022.
PMID: 35232988
Free PMC article.
No abstract available.
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Functional annotation of human long noncoding RNAs via molecular phenotyping.
Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, Akalin A, Antonov IV, Arner E, Bonetti A, Bono H, Borsari B, Brombacher F, Cameron CJ, Cannistraci CV, Cardenas R, Cardon M, Chang H, Dostie J, Ducoli L, Favorov A, Fort A, Garrido D, Gil N, Gimenez J, Guler R, Handoko L, Harshbarger J, Hasegawa A, Hasegawa Y, Hashimoto K, Hayatsu N, Heutink P, Hirose T, Imada EL, Itoh M, Kaczkowski B, Kanhere A, Kawabata E, Kawaji H, Kawashima T, Kelly ST, Kojima M, Kondo N, Koseki H, Kouno T, Kratz A, Kurowska-Stolarska M, Kwon ATJ, Leek J, Lennartsson A, Lizio M, López-Redondo F, Luginbühl J, Maeda S, Makeev VJ, Marchionni L, Medvedeva YA, Minoda A, Müller F, Muñoz-Aguirre M, Murata M, Nishiyori H, Nitta KR, Noguchi S, Noro Y, Nurtdinov R, Okazaki Y, Orlando V, Paquette D, Parr CJC, Rackham OJL, Rizzu P, Sánchez Martinez DF, Sandelin A, Sanjana P, Semple CAM, Shibayama Y, Sivaraman DM, Suzuki T, Szumowski SC, Tagami M, Taylor MS, Terao C, Thodberg M, Thongjuea S, Tripathi V, Ulitsky I, Verardo R, Vorontsov IE, Yamamoto C, Young RS, Baillie JK, Forrest ARR, Guigó R, Hoffman MM, Hon…
See abstract for full author list ➔
Ramilowski JA, et al.
Genome Res. 2020 Jul;30(7):1060-1072. doi: 10.1101/gr.254219.119. Epub 2020 Jul 27.
Genome Res. 2020.
PMID: 32718982
Free PMC article.
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HIFI: estimating DNA-DNA interaction frequency from Hi-C data at restriction-fragment resolution.
Cameron CJ, Dostie J, Blanchette M.
Cameron CJ, et al.
Genome Biol. 2020 Jan 14;21(1):11. doi: 10.1186/s13059-019-1913-y.
Genome Biol. 2020.
PMID: 31937349
Free PMC article.
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Classifying and scoring of molecules with the NGN: new datasets, significance tests, and generalization.
Ma EY, Cameron CJ, Kremer SC.
Ma EY, et al.
BMC Bioinformatics. 2010 Oct 26;11 Suppl 8(Suppl 8):S4. doi: 10.1186/1471-2105-11-S8-S4.
BMC Bioinformatics. 2010.
PMID: 21034429
Free PMC article.
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