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Page 1
Phylogeny and new taxonomy of the Booted Eagles (Accipitriformes: Aquilinae).
Lerner H, Christidis L, Gamauf A, Griffiths C, Haring E, Huddleston CJ, Kabra S, Kocum A, Krosby M, Kvaløy K, Mindell D, Rasmussen P, Røv N, Wadleigh R, Wink M, Gjershaug JO. Lerner H, et al. Among authors: huddleston cj. Zootaxa. 2017 Jan 9;4216(4):zootaxa.4216.4.1. doi: 10.11646/zootaxa.4216.4.1. Zootaxa. 2017. PMID: 28183111
A phylogenomic study of birds reveals their evolutionary history.
Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T. Hackett SJ, et al. Among authors: huddleston cj. Science. 2008 Jun 27;320(5884):1763-8. doi: 10.1126/science.1157704. Science. 2008. PMID: 18583609
Homoplastic microinversions and the avian tree of life.
Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Witt CC, Yuri T. Braun EL, et al. Among authors: huddleston cj. BMC Evol Biol. 2011 May 25;11:141. doi: 10.1186/1471-2148-11-141. BMC Evol Biol. 2011. PMID: 21612607 Free PMC article.
Are transposable element insertions homoplasy free?: an examination using the avian tree of life.
Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T. Han KL, et al. Among authors: huddleston cj. Syst Biol. 2011 May;60(3):375-86. doi: 10.1093/sysbio/syq100. Epub 2011 Feb 8. Syst Biol. 2011. PMID: 21303823 No abstract available.
A well-tested set of primers to amplify regions spread across the avian genome.
Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Smith JV, Witt CC, Yuri T. Kimball RT, et al. Among authors: huddleston cj. Mol Phylogenet Evol. 2009 Mar;50(3):654-60. doi: 10.1016/j.ympev.2008.11.018. Epub 2008 Dec 6. Mol Phylogenet Evol. 2009. PMID: 19084073 No abstract available.
Phylogenomic evidence for multiple losses of flight in ratite birds.
Harshman J, Braun EL, Braun MJ, Huddleston CJ, Bowie RC, Chojnowski JL, Hackett SJ, Han KL, Kimball RT, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Steppan SJ, Witt CC, Yuri T. Harshman J, et al. Among authors: huddleston cj. Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13462-7. doi: 10.1073/pnas.0803242105. Epub 2008 Sep 2. Proc Natl Acad Sci U S A. 2008. PMID: 18765814 Free PMC article.
Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.
Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL. Yuri T, et al. Among authors: huddleston cj. Biology (Basel). 2013 Mar 13;2(1):419-44. doi: 10.3390/biology2010419. Biology (Basel). 2013. PMID: 24832669 Free PMC article.