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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2003 1
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2006 6
2007 3
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2010 1
2011 3
2012 2
2013 3
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2017 4
2018 3
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Page 1
Representing Catalytic Mechanisms with Rule Composition.
Andersen JL, Fagerberg R, Flamm C, Fontana W, Kolčák J, Laurent CVFP, Merkle D, Nøjgaard N. Andersen JL, et al. Among authors: flamm c. J Chem Inf Model. 2022 Nov 28;62(22):5513-5524. doi: 10.1021/acs.jcim.2c00426. Epub 2022 Nov 3. J Chem Inf Model. 2022. PMID: 36326605
Generic Context-Aware Group Contributions.
Flamm C, Hellmuth M, Merkle D, Nojgaard N, Stadler PF. Flamm C, et al. IEEE/ACM Trans Comput Biol Bioinform. 2022 Jan-Feb;19(1):429-442. doi: 10.1109/TCBB.2020.2998948. Epub 2022 Feb 3. IEEE/ACM Trans Comput Biol Bioinform. 2022. PMID: 32750852
ViennaRNA Package 2.0.
Lorenz R, Bernhart SH, Höner Zu Siederdissen C, Tafer H, Flamm C, Stadler PF, Hofacker IL. Lorenz R, et al. Among authors: flamm c. Algorithms Mol Biol. 2011 Nov 24;6:26. doi: 10.1186/1748-7188-6-26. Algorithms Mol Biol. 2011. PMID: 22115189 Free PMC article.
What makes a reaction network "chemical"?
Müller S, Flamm C, Stadler PF. Müller S, et al. Among authors: flamm c. J Cheminform. 2022 Sep 19;14(1):63. doi: 10.1186/s13321-022-00621-8. J Cheminform. 2022. PMID: 36123755 Free PMC article.
Graph transformation for enzymatic mechanisms.
Andersen JL, Fagerberg R, Flamm C, Fontana W, Kolčák J, Laurent CVFP, Merkle D, Nøjgaard N. Andersen JL, et al. Among authors: flamm c. Bioinformatics. 2021 Jul 12;37(Suppl_1):i392-i400. doi: 10.1093/bioinformatics/btab296. Bioinformatics. 2021. PMID: 34252947 Free PMC article.
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members. Keating SM, et al. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Mol Syst Biol. 2020. PMID: 32845085 Free PMC article. Review.
Finding the K best synthesis plans.
Fagerberg R, Flamm C, Kianian R, Merkle D, Stadler PF. Fagerberg R, et al. Among authors: flamm c. J Cheminform. 2018 Apr 5;10(1):19. doi: 10.1186/s13321-018-0273-z. J Cheminform. 2018. PMID: 29623440 Free PMC article.
Statistical mechanics of biomolecular condensates via cavity methods.
Lauber N, Tichacek O, Bose R, Flamm C, Leuzzi L, Tang TD, Ruiz-Mirazo K, De Martino D. Lauber N, et al. Among authors: flamm c. iScience. 2023 Mar 6;26(4):106300. doi: 10.1016/j.isci.2023.106300. eCollection 2023 Apr 21. iScience. 2023. PMID: 36994084 Free PMC article.
Chemical Transformation Motifs-Modelling Pathways as Integer Hyperflows.
Andersen JL, Flamm C, Merkle D, Stadler PF. Andersen JL, et al. Among authors: flamm c. IEEE/ACM Trans Comput Biol Bioinform. 2019 Mar-Apr;16(2):510-523. doi: 10.1109/TCBB.2017.2781724. Epub 2017 Dec 11. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29990045
49 results