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Pareto optimization in algebraic dynamic programming.
Saule C, Giegerich R. Saule C, et al. Algorithms Mol Biol. 2015 Jul 7;10:22. doi: 10.1186/s13015-015-0051-7. eCollection 2015. Algorithms Mol Biol. 2015. PMID: 26150892 Free PMC article.
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms.
Allali J, Saule C, Chauve C, d'Aubenton-Carafa Y, Denise A, Drevet C, Ferraro P, Gautheret D, Herrbach C, Leclerc F, de Monte A, Ouangraoua A, Sagot MF, Termier M, Thermes C, Touzet H. Allali J, et al. Among authors: saule c. Adv Bioinformatics. 2012;2012:893048. doi: 10.1155/2012/893048. Epub 2012 May 23. Adv Bioinformatics. 2012. PMID: 22675348 Free PMC article.
Counting RNA pseudoknotted structures.
Saule C, Régnier M, Steyaert JM, Denise A. Saule C, et al. J Comput Biol. 2011 Oct;18(10):1339-51. doi: 10.1089/cmb.2010.0086. Epub 2011 May 6. J Comput Biol. 2011. PMID: 21548808 Free PMC article.