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1999 2
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2009 5
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The following term was not found in PubMed: Amankwaa-Kyeremeh
Page 1
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.
Krueger F, Andrews SR. Krueger F, et al. Bioinformatics. 2011 Jun 1;27(11):1571-2. doi: 10.1093/bioinformatics/btr167. Epub 2011 Apr 14. Bioinformatics. 2011. PMID: 21493656 Free PMC article.
SUMMARY: A combination of bisulfite treatment of DNA and high-throughput sequencing (BS-Seq) can capture a snapshot of a cell's epigenomic state by revealing its genome-wide cytosine methylation at single base resolution. Bismark is a flexible tool for the time-efficient a …
SUMMARY: A combination of bisulfite treatment of DNA and high-throughput sequencing (BS-Seq) can capture a snapshot of a cell's epigenomic s …
Displacement.
Clark G. Clark G. Stain Technol. 1979 May;54(3):111-9. doi: 10.3109/10520297909112644. Stain Technol. 1979. PMID: 91240
A number of dyes were tried as possible substitutes for the tartrazine. A rose Bengal-Bismark brown Y procedure was developed which stains similarly to Lendrum's phloxine-tartrazine and which does have the needed contrast. After staining for 10 min in 1% aqueous rose Benga …
A number of dyes were tried as possible substitutes for the tartrazine. A rose Bengal-Bismark brown Y procedure was developed which s …
Papanicolaou staining--a review.
Marshall PN. Marshall PN. Microsc Acta. 1983 May;87(3):233-43. Microsc Acta. 1983. PMID: 6195507 Review.
BiSulfite Bolt: A bisulfite sequencing analysis platform.
Farrell C, Thompson M, Tosevska A, Oyetunde A, Pellegrini M. Farrell C, et al. Gigascience. 2021 May 8;10(5):giab033. doi: 10.1093/gigascience/giab033. Gigascience. 2021. PMID: 33966074 Free PMC article.
We also compared BSBolt to several existing bisulfite alignment tools and found BSBolt outperforms Bismark, BSSeeker2, BISCUIT, and BWA-Meth based on alignment accuracy and methylation calling accuracy. ...
We also compared BSBolt to several existing bisulfite alignment tools and found BSBolt outperforms Bismark, BSSeeker2, BISCUIT, and B …
Time to Make a Call? The Ethics of Mandatory Reporting.
Brashler R, Finestone HM, Nevison C, Marshall SC, Deng G, Bismark M, Mukherjee D. Brashler R, et al. PM R. 2016 Jan;8(1):69-74. doi: 10.1016/j.pmrj.2015.11.009. PM R. 2016. PMID: 26773862 Review. No abstract available.
Benchmarking DNA methylation analysis of 14 alignment algorithms for whole genome bisulfite sequencing in mammals.
Gong W, Pan X, Xu D, Ji G, Wang Y, Tian Y, Cai J, Li J, Zhang Z, Yuan X. Gong W, et al. Comput Struct Biotechnol J. 2022 Aug 27;20:4704-4716. doi: 10.1016/j.csbj.2022.08.051. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 36147684 Free PMC article.
Herein, based on the real and simulated WGBS data of 14.77 billion reads, we undertook 936 mappings to benchmark and evaluate 14 wildly utilized alignment algorithms from reads mapping to biological interpretation in humans, cattle and pigs: Bwa-meth, BSBolt, BSMAP, Walt, Abismal …
Herein, based on the real and simulated WGBS data of 14.77 billion reads, we undertook 936 mappings to benchmark and evaluate 14 wildly util …
The SEQC2 epigenomics quality control (EpiQC) study.
Foox J, Nordlund J, Lalancette C, Gong T, Lacey M, Lent S, Langhorst BW, Ponnaluri VKC, Williams L, Padmanabhan KR, Cavalcante R, Lundmark A, Butler D, Mozsary C, Gurvitch J, Greally JM, Suzuki M, Menor M, Nasu M, Alonso A, Sheridan C, Scherer A, Bruinsma S, Golda G, Muszynska A, Łabaj PP, Campbell MA, Wos F, Raine A, Liljedahl U, Axelsson T, Wang C, Chen Z, Yang Z, Li J, Yang X, Wang H, Melnick A, Guo S, Blume A, Franke V, Ibanez de Caceres I, Rodriguez-Antolin C, Rosas R, Davis JW, Ishii J, Megherbi DB, Xiao W, Liao W, Xu J, Hong H, Ning B, Tong W, Akalin A, Wang Y, Deng Y, Mason CE. Foox J, et al. Genome Biol. 2021 Dec 6;22(1):332. doi: 10.1186/s13059-021-02529-2. Genome Biol. 2021. PMID: 34872606 Free PMC article.
After rigorous quality assessment and comparison to Illumina EPIC methylation microarrays and testing on a range of algorithms (Bismark, BitmapperBS, bwa-meth, and BitMapperBS), we find overall high concordance between assays, but also differences in efficiency of read map …
After rigorous quality assessment and comparison to Illumina EPIC methylation microarrays and testing on a range of algorithms (Bismark …
249 results