Studies of Irrawaddy dolphins' acoustics assist in understanding the behaviour of the species and thereby conservation of this species. Whistle signals emitted by Irrawaddy dolphin within the Bay of Brunei in Malaysian waters were characterized. A total of 199 whistles were analysed from seven sightings between January and April 2016. Six types of whistles contours named constant, upsweep, downsweep, concave, convex, and sine were detected when the dolphins engaged in traveling, foraging, and socializing activities. The whistle durations ranged between 0.06 and 3.86 s. The minimum frequency recorded was 443 Hz [Mean = 6000 Hz, standard deviation (SD) = 2320 Hz] and the maximum frequency recorded was 16 071 Hz (Mean = 7139 Hz, SD = 2522 Hz). The mean frequency range (F.R.) for the whistles was 1148 Hz (Minimum F.R. = 0 Hz, Maximum F.R. = 4446 Hz; SD = 876 Hz). Whistles in the Bay of Brunei were compared with population recorded from the waters of Matang and Kalimantan. The comparisons showed differences in whistle duration, minimum frequency, start frequency, and number of inflection point. Variation in whistle occurrence and frequency may be associated with surface behaviour, ambient noise, and recording limitation. This will be an important element when planning a monitoring program.