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DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer.
Baid G, Cook DE, Shafin K, Yun T, Llinares-López F, Berthet Q, Belyaeva A, Töpfer A, Wenger AM, Rowell WJ, Yang H, Kolesnikov A, Ammar W, Vert JP, Vaswani A, McLean CY, Nattestad M, Chang PC, Carroll A. Baid G, et al. Among authors: vaswani a. Nat Biotechnol. 2023 Feb;41(2):232-238. doi: 10.1038/s41587-022-01435-7. Epub 2022 Sep 1. Nat Biotechnol. 2023. PMID: 36050551
Decoding the neural representation of story meanings across languages.
Dehghani M, Boghrati R, Man K, Hoover J, Gimbel SI, Vaswani A, Zevin JD, Immordino-Yang MH, Gordon AS, Damasio A, Kaplan JT. Dehghani M, et al. Among authors: vaswani a. Hum Brain Mapp. 2017 Dec;38(12):6096-6106. doi: 10.1002/hbm.23814. Epub 2017 Sep 20. Hum Brain Mapp. 2017. PMID: 28940969 Free PMC article.
Computation-Assisted Identification of Bioactive Compounds in Botanical Extracts: A Case Study of Anti-Inflammatory Natural Products from Hops.
Brown KS, Jamieson P, Wu W, Vaswani A, Alcazar Magana A, Choi J, Mattio LM, Cheong PH, Nelson D, Reardon PN, Miranda CL, Maier CS, Stevens JF. Brown KS, et al. Among authors: vaswani a. Antioxidants (Basel). 2022 Jul 19;11(7):1400. doi: 10.3390/antiox11071400. Antioxidants (Basel). 2022. PMID: 35883889 Free PMC article.
Integrating High-Resolution Mass Spectral Data, Bioassays and Computational Models to Annotate Bioactives in Botanical Extracts: Case Study Analysis of C. asiatica Extract Associates Dicaffeoylquinic Acids with Protection against Amyloid-β Toxicity.
Alcázar Magaña A, Vaswani A, Brown KS, Jiang Y, Alam MN, Caruso M, Lak P, Cheong P, Gray NE, Quinn JF, Soumyanath A, Stevens JF, Maier CS. Alcázar Magaña A, et al. Among authors: vaswani a. Molecules. 2024 Feb 13;29(4):838. doi: 10.3390/molecules29040838. Molecules. 2024. PMID: 38398590 Free PMC article.
Integration of mass spectral fingerprinting analysis with precursor ion (MS1) quantification for the characterisation of botanical extracts: application to extracts of Centella asiatica (L.) Urban.
Alcazar Magana A, Wright K, Vaswani A, Caruso M, Reed RL, Bailey CF, Nguyen T, Gray NE, Soumyanath A, Quinn J, Stevens JF, Maier CS. Alcazar Magana A, et al. Among authors: vaswani a. Phytochem Anal. 2020 Nov;31(6):722-738. doi: 10.1002/pca.2936. Epub 2020 Apr 12. Phytochem Anal. 2020. PMID: 32281154 Free PMC article.