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ImmCellFie: A user-friendly web-based platform to infer metabolic function from omics data.
Masson HO, Borland D, Reilly J, Telleria A, Shrivastava S, Watson M, Bustillos L, Li Z, Capps L, Kellman BP, King ZA, Richelle A, Lewis NE, Robasky K. Masson HO, et al. Among authors: richelle a. STAR Protoc. 2023 Mar 17;4(1):102069. doi: 10.1016/j.xpro.2023.102069. Epub 2023 Jan 25. STAR Protoc. 2023. PMID: 36853701 Free PMC article.
Driving towards digital biomanufacturing by CHO genome-scale models.
Park SY, Choi DH, Song J, Lakshmanan M, Richelle A, Yoon S, Kontoravdi C, Lewis NE, Lee DY. Park SY, et al. Among authors: richelle a. Trends Biotechnol. 2024 Mar 27:S0167-7799(24)00065-9. doi: 10.1016/j.tibtech.2024.03.001. Online ahead of print. Trends Biotechnol. 2024. PMID: 38548556 Review.
MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, García-Jiménez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrgård MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, König M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, Sánchez BJ, Schaap PJ, Malik Sheriff RS, Shoaie S, Sonnenschein N, Teusink B, Vilaça P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C. Lieven C, et al. Among authors: richelle a. Nat Biotechnol. 2020 Mar;38(3):272-276. doi: 10.1038/s41587-020-0446-y. Nat Biotechnol. 2020. PMID: 32123384 Free PMC article. No abstract available.
Model-based assessment of mammalian cell metabolic functionalities using omics data.
Richelle A, Kellman BP, Wenzel AT, Chiang AWT, Reagan T, Gutierrez JM, Joshi C, Li S, Liu JK, Masson H, Lee J, Li Z, Heirendt L, Trefois C, Juarez EF, Bath T, Borland D, Mesirov JP, Robasky K, Lewis NE. Richelle A, et al. Cell Rep Methods. 2021 Jul 26;1(3):100040. doi: 10.1016/j.crmeth.2021.100040. Epub 2021 Jun 30. Cell Rep Methods. 2021. PMID: 34761247 Free PMC article.
22 results