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Page 1
Predicted models and CCP4.
Simpkin AJ, Caballero I, McNicholas S, Stevenson K, Jiménez E, Sánchez Rodríguez F, Fando M, Uski V, Ballard C, Chojnowski G, Lebedev A, Krissinel E, Usón I, Rigden DJ, Keegan RM. Simpkin AJ, et al. Among authors: lebedev a. Acta Crystallogr D Struct Biol. 2023 Sep 1;79(Pt 9):806-819. doi: 10.1107/S2059798323006289. Epub 2023 Aug 17. Acta Crystallogr D Struct Biol. 2023. PMID: 37594303 Free PMC article.
The CCP4 suite: integrative software for macromolecular crystallography.
Agirre J, Atanasova M, Bagdonas H, Ballard CB, Baslé A, Beilsten-Edmands J, Borges RJ, Brown DG, Burgos-Mármol JJ, Berrisford JM, Bond PS, Caballero I, Catapano L, Chojnowski G, Cook AG, Cowtan KD, Croll TI, Debreczeni JÉ, Devenish NE, Dodson EJ, Drevon TR, Emsley P, Evans G, Evans PR, Fando M, Foadi J, Fuentes-Montero L, Garman EF, Gerstel M, Gildea RJ, Hatti K, Hekkelman ML, Heuser P, Hoh SW, Hough MA, Jenkins HT, Jiménez E, Joosten RP, Keegan RM, Keep N, Krissinel EB, Kolenko P, Kovalevskiy O, Lamzin VS, Lawson DM, Lebedev AA, Leslie AGW, Lohkamp B, Long F, Malý M, McCoy AJ, McNicholas SJ, Medina A, Millán C, Murray JW, Murshudov GN, Nicholls RA, Noble MEM, Oeffner R, Pannu NS, Parkhurst JM, Pearce N, Pereira J, Perrakis A, Powell HR, Read RJ, Rigden DJ, Rochira W, Sammito M, Sánchez Rodríguez F, Sheldrick GM, Shelley KL, Simkovic F, Simpkin AJ, Skubak P, Sobolev E, Steiner RA, Stevenson K, Tews I, Thomas JMH, Thorn A, Valls JT, Uski V, Usón I, Vagin A, Velankar S, Vollmar M, Walden H, Waterman D, Wilson KS, Winn MD, Winter G, Wojdyr M, Yamashita K. Agirre J, et al. Among authors: lebedev aa. Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):449-461. doi: 10.1107/S2059798323003595. Epub 2023 May 30. Acta Crystallogr D Struct Biol. 2023. PMID: 37259835 Free PMC article.
Modelling covalent linkages in CCP4.
Nicholls RA, Joosten RP, Long F, Wojdyr M, Lebedev A, Krissinel E, Catapano L, Fischer M, Emsley P, Murshudov GN. Nicholls RA, et al. Among authors: lebedev a. Acta Crystallogr D Struct Biol. 2021 Jun 1;77(Pt 6):712-726. doi: 10.1107/S2059798321001753. Epub 2021 May 19. Acta Crystallogr D Struct Biol. 2021. PMID: 34076587 Free PMC article.
Crystal structure of the collagen prolyl 4-hydroxylase (C-P4H) catalytic domain complexed with PDI: Toward a model of the C-P4H α2β2 tetramer.
Murthy AV, Sulu R, Lebedev A, Salo AM, Korhonen K, Venkatesan R, Tu H, Bergmann U, Jänis J, Laitaoja M, Ruddock LW, Myllyharju J, Koski MK, Wierenga RK. Murthy AV, et al. Among authors: lebedev a. J Biol Chem. 2022 Dec;298(12):102614. doi: 10.1016/j.jbc.2022.102614. Epub 2022 Oct 18. J Biol Chem. 2022. PMID: 36265586 Free PMC article.
Vitamin D Insufficiency in Overweight and Obese Children and Adolescents.
Zakharova I, Klimov L, Kuryaninova V, Nikitina I, Malyavskaya S, Dolbnya S, Kasyanova A, Atanesyan R, Stoyan M, Todieva A, Kostrova G, Lebedev A. Zakharova I, et al. Among authors: lebedev a. Front Endocrinol (Lausanne). 2019 Mar 1;10:103. doi: 10.3389/fendo.2019.00103. eCollection 2019. Front Endocrinol (Lausanne). 2019. PMID: 30881343 Free PMC article. Review.
ARCIMBOLDO on coiled coils.
Caballero I, Sammito M, Millán C, Lebedev A, Soler N, Usón I. Caballero I, et al. Among authors: lebedev a. Acta Crystallogr D Struct Biol. 2018 Mar 1;74(Pt 3):194-204. doi: 10.1107/S2059798317017582. Epub 2018 Mar 2. Acta Crystallogr D Struct Biol. 2018. PMID: 29533227 Free PMC article.
SIMBAD: a sequence-independent molecular-replacement pipeline.
Simpkin AJ, Simkovic F, Thomas JMH, Savko M, Lebedev A, Uski V, Ballard C, Wojdyr M, Wu R, Sanishvili R, Xu Y, Lisa MN, Buschiazzo A, Shepard W, Rigden DJ, Keegan RM. Simpkin AJ, et al. Among authors: lebedev a. Acta Crystallogr D Struct Biol. 2018 Jul 1;74(Pt 7):595-605. doi: 10.1107/S2059798318005752. Epub 2018 Jun 8. Acta Crystallogr D Struct Biol. 2018. PMID: 29968670 Free PMC article.
Distributed computing for macromolecular crystallography.
Krissinel E, Uski V, Lebedev A, Winn M, Ballard C. Krissinel E, et al. Among authors: lebedev a. Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):143-151. doi: 10.1107/S2059798317014565. Epub 2018 Feb 1. Acta Crystallogr D Struct Biol. 2018. PMID: 29533240 Free PMC article.
Using Phaser and ensembles to improve the performance of SIMBAD.
Simpkin AJ, Simkovic F, Thomas JMH, Savko M, Lebedev A, Uski V, Ballard CC, Wojdyr M, Shepard W, Rigden DJ, Keegan RM. Simpkin AJ, et al. Among authors: lebedev a. Acta Crystallogr D Struct Biol. 2020 Jan 1;76(Pt 1):1-8. doi: 10.1107/S2059798319015031. Epub 2020 Jan 1. Acta Crystallogr D Struct Biol. 2020. PMID: 31909738 Free PMC article.
CCP4 Cloud for structure determination and project management in macromolecular crystallography.
Krissinel E, Lebedev AA, Uski V, Ballard CB, Keegan RM, Kovalevskiy O, Nicholls RA, Pannu NS, Skubák P, Berrisford J, Fando M, Lohkamp B, Wojdyr M, Simpkin AJ, Thomas JMH, Oliver C, Vonrhein C, Chojnowski G, Basle A, Purkiss A, Isupov MN, McNicholas S, Lowe E, Triviño J, Cowtan K, Agirre J, Rigden DJ, Uson I, Lamzin V, Tews I, Bricogne G, Leslie AGW, Brown DG. Krissinel E, et al. Among authors: lebedev aa. Acta Crystallogr D Struct Biol. 2022 Sep 1;78(Pt 9):1079-1089. doi: 10.1107/S2059798322007987. Epub 2022 Aug 30. Acta Crystallogr D Struct Biol. 2022. PMID: 36048148 Free PMC article.
47 results