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Real-time evaluation of signal accuracy in wastewater surveillance of pathogens with high rates of mutation.
Sci Rep. 2024 Feb 14;14(1):3728. doi: 10.1038/s41598-024-54319-y.
Sci Rep. 2024.
PMID: 38355869
Free PMC article.
A Novel Tiled Amplicon Sequencing Assay Targeting the Tomato Brown Rugose Fruit Virus (ToBRFV) Genome Reveals Widespread Distribution in Municipal Wastewater Treatment Systems in the Province of Ontario, Canada.
Nash D, Ellmen I, Knapp JJ, Menon R, Overton AK, Cheng J, Lynch MDJ, Nissimov JI, Charles TC.
Nash D, et al. Among authors: overton ak.
Viruses. 2024 Mar 17;16(3):460. doi: 10.3390/v16030460.
Viruses. 2024.
PMID: 38543825
Free PMC article.
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Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data.
Sutcliffe SG, Kraemer SA, Ellmen I, Knapp JJ, Overton AK, Nash D, Nissimov JI, Charles TC, Dreifuss D, Topolsky I, Baykal PI, Fuhrmann L, Jablonski KP, Beerenwinkel N, Levy JI, Olabode AS, Becker DG, Gugan G, Brintnell E, Poon AFY, Valieris R, Drummond RD, Defelicibus A, Dias-Neto E, Rosales RA, Tojal da Silva I, Orfanou A, Psomopoulos F, Pechlivanis N, Pipes L, Chen Z, Baaijens JA, Baym M, Shapiro BJ.
Sutcliffe SG, et al. Among authors: overton ak.
Microb Genom. 2024 May;10(5). doi: 10.1099/mgen.0.001249.
Microb Genom. 2024.
PMID: 38785221
Free article.
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