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Page 1
Pragmatic Coarse-Graining of Proteins: Models and Applications.
Borges-Araújo L, Patmanidis I, Singh AP, Santos LHS, Sieradzan AK, Vanni S, Czaplewski C, Pantano S, Shinoda W, Monticelli L, Liwo A, Marrink SJ, Souza PCT. Borges-Araújo L, et al. Among authors: sieradzan ak. J Chem Theory Comput. 2023 Oct 24;19(20):7112-7135. doi: 10.1021/acs.jctc.3c00733. Epub 2023 Oct 3. J Chem Theory Comput. 2023. PMID: 37788237 Review.
Shielding effect in protein folding.
Sieradzan AK, Lipska AG, Lubecka EA. Sieradzan AK, et al. J Mol Graph Model. 2018 Jan;79:118-132. doi: 10.1016/j.jmgm.2017.10.018. Epub 2017 Nov 1. J Mol Graph Model. 2018. PMID: 29161634
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.
Lensink MF, Brysbaert G, Raouraoua N, Bates PA, Giulini M, Honorato RV, van Noort C, Teixeira JMC, Bonvin AMJJ, Kong R, Shi H, Lu X, Chang S, Liu J, Guo Z, Chen X, Morehead A, Roy RS, Wu T, Giri N, Quadir F, Chen C, Cheng J, Del Carpio CA, Ichiishi E, Rodriguez-Lumbreras LA, Fernandez-Recio J, Harmalkar A, Chu LS, Canner S, Smanta R, Gray JJ, Li H, Lin P, He J, Tao H, Huang SY, Roel-Touris J, Jimenez-Garcia B, Christoffer CW, Jain AJ, Kagaya Y, Kannan H, Nakamura T, Terashi G, Verburgt JC, Zhang Y, Zhang Z, Fujuta H, Sekijima M, Kihara D, Khan O, Kotelnikov S, Ghani U, Padhorny D, Beglov D, Vajda S, Kozakov D, Negi SS, Ricciardelli T, Barradas-Bautista D, Cao Z, Chawla M, Cavallo L, Oliva R, Yin R, Cheung M, Guest JD, Lee J, Pierce BG, Shor B, Cohen T, Halfon M, Schneidman-Duhovny D, Zhu S, Yin R, Sun Y, Shen Y, Maszota-Zieleniak M, Bojarski KK, Lubecka EA, Marcisz M, Danielsson A, Dziadek L, Gaardlos M, Gieldon A, Liwo A, Samsonov SA, Slusarz R, Zieba K, Sieradzan AK, Czaplewski C, Kobayashi S, Miyakawa Y, Kiyota Y, Takeda-Shitaka M, Olechnovic K, Valancauskas L, Dapkunas J, Venclovas C, Wallner B, Yang L, Hou C, He X, Guo S, Jiang S, Ma X, Duan R, Qui L, Xu X, Zou X, Vela… See abstract for full author list ➔ Lensink MF, et al. Among authors: sieradzan ak. Proteins. 2023 Dec;91(12):1658-1683. doi: 10.1002/prot.26609. Epub 2023 Oct 31. Proteins. 2023. PMID: 37905971 Free PMC article.
What Makes Telomeres Unique?
Sieradzan AK, Krupa P, Wales DJ. Sieradzan AK, et al. J Phys Chem B. 2017 Mar 16;121(10):2207-2219. doi: 10.1021/acs.jpcb.6b08780. Epub 2017 Mar 1. J Phys Chem B. 2017. PMID: 28194966
Disulfide-Linked Peptides for Blocking BTLA/HVEM Binding.
Spodzieja M, Kuncewicz K, Sieradzan A, Karczyńska A, Iwaszkiewicz J, Cesson V, Węgrzyn K, Zhukov I, Maszota-Zieleniak M, Michielin O, Speiser DE, Zoete V, Derré L, Rodziewicz-Motowidło S. Spodzieja M, et al. Among authors: sieradzan a. Int J Mol Sci. 2020 Jan 18;21(2):636. doi: 10.3390/ijms21020636. Int J Mol Sci. 2020. PMID: 31963646 Free PMC article.
Mitochondrial potassium channels: A novel calcitriol target.
Olszewska AM, Sieradzan AK, Bednarczyk P, Szewczyk A, Żmijewski MA. Olszewska AM, et al. Among authors: sieradzan ak. Cell Mol Biol Lett. 2022 Jan 3;27(1):3. doi: 10.1186/s11658-021-00299-0. Cell Mol Biol Lett. 2022. PMID: 34979905 Free PMC article.
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pagès G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A. Fajardo JE, et al. Among authors: sieradzan ak. Proteins. 2019 Dec;87(12):1283-1297. doi: 10.1002/prot.25816. Epub 2019 Oct 7. Proteins. 2019. PMID: 31569265 Free PMC article.
72 results