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The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars.
Nat Genet. 2024 Apr;56(4):721-731. doi: 10.1038/s41588-024-01695-w. Epub 2024 Apr 15.
Nat Genet. 2024.
PMID: 38622339
Free PMC article.
Identification of potential quality markers in Indonesia's Arabica specialty coffee using GC/MS-based metabolomics approach.
Amalia F, Irifune T, Takegami T, Yusianto, Sumirat U, Putri SP, Fukusaki E.
Amalia F, et al. Among authors: sumirat u.
Metabolomics. 2023 Oct 25;19(11):90. doi: 10.1007/s11306-023-02051-5.
Metabolomics. 2023.
PMID: 37880543
Free PMC article.
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Ecological and genomic vulnerability to climate change across native populations of Robusta coffee (Coffea canephora).
Tournebize R, Borner L, Manel S, Meynard CN, Vigouroux Y, Crouzillat D, Fournier C, Kassam M, Descombes P, Tranchant-Dubreuil C, Parrinello H, Kiwuka C, Sumirat U, Legnate H, Kambale JL, Sonké B, Mahinga JC, Musoli P, Janssens SB, Stoffelen P, de Kochko A, Poncet V.
Tournebize R, et al. Among authors: sumirat u.
Glob Chang Biol. 2022 Jul;28(13):4124-4142. doi: 10.1111/gcb.16191. Epub 2022 May 8.
Glob Chang Biol. 2022.
PMID: 35527235
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Genetic diversity of native and cultivated Ugandan Robusta coffee (Coffea canephora Pierre ex A. Froehner): Climate influences, breeding potential and diversity conservation.
Kiwuka C, Goudsmit E, Tournebize R, de Aquino SO, Douma JC, Bellanger L, Crouzillat D, Stoffelen P, Sumirat U, Legnaté H, Marraccini P, de Kochko A, Andrade AC, Mulumba JW, Musoli P, Anten NPR, Poncet V.
Kiwuka C, et al. Among authors: sumirat u.
PLoS One. 2021 Feb 8;16(2):e0245965. doi: 10.1371/journal.pone.0245965. eCollection 2021.
PLoS One. 2021.
PMID: 33556074
Free PMC article.
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Development and evaluation of a genome-wide Coffee 8.5K SNP array and its application for high-density genetic mapping and for investigating the origin of Coffea arabica L.
Merot-L'anthoene V, Tournebize R, Darracq O, Rattina V, Lepelley M, Bellanger L, Tranchant-Dubreuil C, Coulée M, Pégard M, Metairon S, Fournier C, Stoffelen P, Janssens SB, Kiwuka C, Musoli P, Sumirat U, Legnaté H, Kambale JL, Ferreira da Costa Neto J, Revel C, de Kochko A, Descombes P, Crouzillat D, Poncet V.
Merot-L'anthoene V, et al. Among authors: sumirat u.
Plant Biotechnol J. 2019 Jul;17(7):1418-1430. doi: 10.1111/pbi.13066. Epub 2019 Feb 4.
Plant Biotechnol J. 2019.
PMID: 30582651
Free PMC article.
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Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content.
Hamon P, Grover CE, Davis AP, Rakotomalala JJ, Raharimalala NE, Albert VA, Sreenath HL, Stoffelen P, Mitchell SE, Couturon E, Hamon S, de Kochko A, Crouzillat D, Rigoreau M, Sumirat U, Akaffou S, Guyot R.
Hamon P, et al. Among authors: sumirat u.
Mol Phylogenet Evol. 2017 Apr;109:351-361. doi: 10.1016/j.ympev.2017.02.009. Epub 2017 Feb 16.
Mol Phylogenet Evol. 2017.
PMID: 28212875
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Somatic embryogenesis and vegetative cutting capacity are under distinct genetic control in Coffea canephora Pierre.
Priyono, Florin B, Rigoreau M, Ducos JP, Sumirat U, Mawardi S, Lambot C, Broun P, Pétiard V, Wahyudi T, Crouzillat D.
Priyono, et al. Among authors: sumirat u.
Plant Cell Rep. 2010 Apr;29(4):343-57. doi: 10.1007/s00299-010-0825-9. Epub 2010 Feb 10.
Plant Cell Rep. 2010.
PMID: 20145933
Free PMC article.
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