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The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars.
Salojärvi J, Rambani A, Yu Z, Guyot R, Strickler S, Lepelley M, Wang C, Rajaraman S, Rastas P, Zheng C, Muñoz DS, Meidanis J, Paschoal AR, Bawin Y, Krabbenhoft TJ, Wang ZQ, Fleck SJ, Aussel R, Bellanger L, Charpagne A, Fournier C, Kassam M, Lefebvre G, Métairon S, Moine D, Rigoreau M, Stolte J, Hamon P, Couturon E, Tranchant-Dubreuil C, Mukherjee M, Lan T, Engelhardt J, Stadler P, Correia De Lemos SM, Suzuki SI, Sumirat U, Wai CM, Dauchot N, Orozco-Arias S, Garavito A, Kiwuka C, Musoli P, Nalukenge A, Guichoux E, Reinout H, Smit M, Carretero-Paulet L, Filho OG, Braghini MT, Padilha L, Sera GH, Ruttink T, Henry R, Marraccini P, Van de Peer Y, Andrade A, Domingues D, Giuliano G, Mueller L, Pereira LF, Plaisance S, Poncet V, Rombauts S, Sankoff D, Albert VA, Crouzillat D, de Kochko A, Descombes P. Salojärvi J, et al. Among authors: carretero paulet l. Nat Genet. 2024 Apr;56(4):721-731. doi: 10.1038/s41588-024-01695-w. Epub 2024 Apr 15. Nat Genet. 2024. PMID: 38622339 Free PMC article.
Chromosome-scale assembly of the Moringa oleifera Lam. genome uncovers polyploid history and evolution of secondary metabolism pathways through tandem duplication.
Chang J, Marczuk-Rojas JP, Waterman C, Garcia-Llanos A, Chen S, Ma X, Hulse-Kemp A, Van Deynze A, Van de Peer Y, Carretero-Paulet L. Chang J, et al. Among authors: carretero paulet l. Plant Genome. 2022 Sep;15(3):e20238. doi: 10.1002/tpg2.20238. Epub 2022 Jul 27. Plant Genome. 2022. PMID: 35894687 Free article.
The evolutionary conundrum of whole-genome duplication.
Carretero-Paulet L, Van de Peer Y. Carretero-Paulet L, et al. Am J Bot. 2020 Aug;107(8):1101-1105. doi: 10.1002/ajb2.1520. Epub 2020 Aug 20. Am J Bot. 2020. PMID: 32815563 Free PMC article. No abstract available.
The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation.
Rendón-Anaya M, Ibarra-Laclette E, Méndez-Bravo A, Lan T, Zheng C, Carretero-Paulet L, Perez-Torres CA, Chacón-López A, Hernandez-Guzmán G, Chang TH, Farr KM, Barbazuk WB, Chamala S, Mutwil M, Shivhare D, Alvarez-Ponce D, Mitter N, Hayward A, Fletcher S, Rozas J, Sánchez Gracia A, Kuhn D, Barrientos-Priego AF, Salojärvi J, Librado P, Sankoff D, Herrera-Estrella A, Albert VA, Herrera-Estrella L. Rendón-Anaya M, et al. Among authors: carretero paulet l. Proc Natl Acad Sci U S A. 2019 Aug 20;116(34):17081-17089. doi: 10.1073/pnas.1822129116. Epub 2019 Aug 6. Proc Natl Acad Sci U S A. 2019. PMID: 31387975 Free PMC article.
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