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RNA language models predict mutations that improve RNA function.
bioRxiv [Preprint]. 2024 Apr 6:2024.04.05.588317. doi: 10.1101/2024.04.05.588317.
bioRxiv. 2024.
PMID: 38617247
Free PMC article.
Preprint.
Interactions between terminal ribosomal RNA helices stabilize the E. coli large ribosomal subunit.
Nissley AJ, Kamal TS, Cate JHD.
Nissley AJ, et al.
RNA. 2023 Oct;29(10):1500-1508. doi: 10.1261/rna.079690.123. Epub 2023 Jul 7.
RNA. 2023.
PMID: 37419664
Free PMC article.
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Rare ribosomal RNA sequences from archaea stabilize the bacterial ribosome.
Nissley AJ, Penev PI, Watson ZL, Banfield JF, Cate JHD.
Nissley AJ, et al.
Nucleic Acids Res. 2023 Feb 28;51(4):1880-1894. doi: 10.1093/nar/gkac1273.
Nucleic Acids Res. 2023.
PMID: 36660825
Free PMC article.
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Corrole-protein interactions in H-NOX and HasA.
Lemon CM, Nissley AJ, Latorraca NR, Wittenborn EC, Marletta MA.
Lemon CM, et al. Among authors: nissley aj.
RSC Chem Biol. 2022 Mar 21;3(5):571-581. doi: 10.1039/d2cb00004k. eCollection 2022 May 11.
RSC Chem Biol. 2022.
PMID: 35656484
Free PMC article.
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A Tale of Two Transitions: The Unfolding Mechanism of the prfA RNA Thermosensor.
Zhang H, Hall I, Nissley AJ, Abdallah K, Keane SC.
Zhang H, et al. Among authors: nissley aj.
Biochemistry. 2020 Dec 8;59(48):4533-4545. doi: 10.1021/acs.biochem.0c00588. Epub 2020 Nov 24.
Biochemistry. 2020.
PMID: 33231432
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