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Page 1
RNA language models predict mutations that improve RNA function.
Shulgina Y, Trinidad MI, Langeberg CJ, Nisonoff H, Chithrananda S, Skopintsev P, Nissley AJ, Patel J, Boger RS, Shi H, Yoon PH, Doherty EE, Pande T, Iyer AM, Doudna JA, Cate JHD. Shulgina Y, et al. Among authors: doherty ee. bioRxiv [Preprint]. 2024 Apr 6:2024.04.05.588317. doi: 10.1101/2024.04.05.588317. bioRxiv. 2024. PMID: 38617247 Free PMC article. Preprint.
CasPEDIA Database: a functional classification system for class 2 CRISPR-Cas enzymes.
Adler BA, Trinidad MI, Bellieny-Rabelo D, Zhang E, Karp HM, Skopintsev P, Thornton BW, Weissman RF, Yoon PH, Chen L, Hessler T, Eggers AR, Colognori D, Boger R, Doherty EE, Tsuchida CA, Tran RV, Hofman L, Shi H, Wasko KM, Zhou Z, Xia C, Al-Shimary MJ, Patel JR, Thomas VCJX, Pattali R, Kan MJ, Vardapetyan A, Yang A, Lahiri A, Maxwell MF, Murdock AG, Ramit GC, Henderson HR, Calvert RW, Bamert RS, Knott GJ, Lapinaite A, Pausch P, Cofsky JC, Sontheimer EJ, Wiedenheft B, Fineran PC, Brouns SJJ, Sashital DG, Thomas BC, Brown CT, Goltsman DSA, Barrangou R, Siksnys V, Banfield JF, Savage DF, Doudna JA. Adler BA, et al. Among authors: doherty ee. Nucleic Acids Res. 2024 Jan 5;52(D1):D590-D596. doi: 10.1093/nar/gkad890. Nucleic Acids Res. 2024. PMID: 37889041 Free PMC article.
Rapid DNA unwinding accelerates genome editing by engineered CRISPR-Cas9.
Eggers AR, Chen K, Soczek KM, Tuck OT, Doherty EE, Thornton BW, Xu B, Trinidad MI, Doudna JA. Eggers AR, et al. Among authors: doherty ee. bioRxiv [Preprint]. 2023 Dec 15:2023.12.14.571777. doi: 10.1101/2023.12.14.571777. bioRxiv. 2023. PMID: 38168238 Free PMC article. Updated. Preprint.
Rapid DNA unwinding accelerates genome editing by engineered CRISPR-Cas9.
Eggers AR, Chen K, Soczek KM, Tuck OT, Doherty EE, Xu B, Trinidad MI, Thornton BW, Yoon PH, Doudna JA. Eggers AR, et al. Among authors: doherty ee. Cell. 2024 May 13:S0092-8674(24)00457-4. doi: 10.1016/j.cell.2024.04.031. Online ahead of print. Cell. 2024. PMID: 38781968 Free article.
Cohort Profile: The Woodlawn Study.
Doherty EE, Green KM. Doherty EE, et al. J Dev Life Course Criminol. 2023 Sep;9(3):531-554. doi: 10.1007/s40865-023-00236-z. Epub 2023 Jun 8. J Dev Life Course Criminol. 2023. PMID: 38283115
Hematopoietic stem cell transplantation for B-thalassemia major with alemtuzumab.
Sánchez LM, George A, Friend BD, Bhar S, Sasa G, Doherty EE, Craddock J, Steffin D, Salem B, Yassine K, Omer B, Martinez C, Leung K, Krance RA, John TD. Sánchez LM, et al. Among authors: doherty ee. Pediatr Hematol Oncol. 2024 May;41(4):260-272. doi: 10.1080/08880018.2023.2296933. Epub 2023 Dec 22. Pediatr Hematol Oncol. 2024. PMID: 38131101
Nucleoside analogs in ADAR guide strands targeting 5'-UA̲ sites.
Brinkman HF, Jauregui Matos V, Mendoza HG, Doherty EE, Beal PA. Brinkman HF, et al. Among authors: doherty ee. RSC Chem Biol. 2022 Oct 31;4(1):74-83. doi: 10.1039/d2cb00165a. eCollection 2023 Jan 4. RSC Chem Biol. 2022. PMID: 36685257 Free PMC article.
46 results