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Bento: a toolkit for subcellular analysis of spatial transcriptomics data.
Mah CK, Ahmed N, Lopez NA, Lam DC, Pong A, Monell A, Kern C, Han Y, Prasad G, Cesnik AJ, Lundberg E, Zhu Q, Carter H, Yeo GW. Mah CK, et al. Among authors: cesnik aj. Genome Biol. 2024 Apr 2;25(1):82. doi: 10.1186/s13059-024-03217-7. Genome Biol. 2024. PMID: 38566187 Free article.
Author Correction: Spatiotemporal dissection of the cell cycle with single-cell proteogenomics.
Mahdessian D, Cesnik AJ, Gnann C, Danielsson F, Stenström L, Arif M, Zhang C, Le T, Johansson F, Schutten R, Bäckström A, Axelsson U, Thul P, Cho NH, Carja O, Uhlén M, Mardinoglu A, Stadler C, Lindskog C, Ayoglu B, Leonetti MD, Pontén F, Sullivan DP, Lundberg E. Mahdessian D, et al. Among authors: cesnik aj. Nature. 2022 Aug;608(7924):E32. doi: 10.1038/s41586-022-05180-4. Nature. 2022. PMID: 35931766 No abstract available.
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.
LeDuc RD, Deutsch EW, Binz PA, Fellers RT, Cesnik AJ, Klein JA, Van Den Bossche T, Gabriels R, Yalavarthi A, Perez-Riverol Y, Carver J, Bittremieux W, Kawano S, Pullman B, Bandeira N, Kelleher NL, Thomas PM, Vizcaíno JA. LeDuc RD, et al. Among authors: cesnik aj. J Proteome Res. 2022 Apr 1;21(4):1189-1195. doi: 10.1021/acs.jproteome.1c00771. Epub 2022 Mar 15. J Proteome Res. 2022. PMID: 35290070 Free PMC article.
The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells.
Melani RD, Gerbasi VR, Anderson LC, Sikora JW, Toby TK, Hutton JE, Butcher DS, Negrão F, Seckler HS, Srzentić K, Fornelli L, Camarillo JM, LeDuc RD, Cesnik AJ, Lundberg E, Greer JB, Fellers RT, Robey MT, DeHart CJ, Forte E, Hendrickson CL, Abbatiello SE, Thomas PM, Kokaji AI, Levitsky J, Kelleher NL. Melani RD, et al. Among authors: cesnik aj. Science. 2022 Jan 28;375(6579):411-418. doi: 10.1126/science.aaz5284. Epub 2022 Jan 27. Science. 2022. PMID: 35084980 Free PMC article.
Spatiotemporal dissection of the cell cycle with single-cell proteogenomics.
Mahdessian D, Cesnik AJ, Gnann C, Danielsson F, Stenström L, Arif M, Zhang C, Le T, Johansson F, Schutten R, Bäckström A, Axelsson U, Thul P, Cho NH, Carja O, Uhlén M, Mardinoglu A, Stadler C, Lindskog C, Ayoglu B, Leonetti MD, Pontén F, Sullivan DP, Lundberg E. Mahdessian D, et al. Among authors: cesnik aj. Nature. 2021 Feb;590(7847):649-654. doi: 10.1038/s41586-021-03232-9. Epub 2021 Feb 24. Nature. 2021. PMID: 33627808
Spritz: A Proteogenomic Database Engine.
Cesnik AJ, Miller RM, Ibrahim K, Lu L, Millikin RJ, Shortreed MR, Frey BL, Smith LM. Cesnik AJ, et al. J Proteome Res. 2021 Apr 2;20(4):1826-1834. doi: 10.1021/acs.jproteome.0c00407. Epub 2020 Oct 7. J Proteome Res. 2021. PMID: 32967423 Free PMC article.
Author Correction: Analysis of the Human Protein Atlas Image Classification competition.
Ouyang W, Winsnes CF, Hjelmare M, Cesnik AJ, Åkesson L, Xu H, Sullivan DP, Dai S, Lan J, Jinmo P, Galib SM, Henkel C, Hwang K, Poplavskiy D, Tunguz B, Wolfinger RD, Gu Y, Li C, Xie J, Buslov D, Fironov S, Kiselev A, Panchenko D, Cao X, Wei R, Wu Y, Zhu X, Tseng KL, Gao Z, Ju C, Yi X, Zheng H, Kappel C, Lundberg E. Ouyang W, et al. Among authors: cesnik aj. Nat Methods. 2020 Sep;17(9):948. doi: 10.1038/s41592-020-0937-2. Nat Methods. 2020. PMID: 32760039 Free PMC article.
30 results