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Metamorphic proteins and how to find them.
Porter LL, Artsimovitch I, Ramírez-Sarmiento CA. Porter LL, et al. Curr Opin Struct Biol. 2024 Jun;86:102807. doi: 10.1016/j.sbi.2024.102807. Epub 2024 Mar 26. Curr Opin Struct Biol. 2024. PMID: 38537533 Free article. Review.
Tales of the unexpected.
Aponte Santiago N, Konecki S, Porter L, Virk H. Aponte Santiago N, et al. Elife. 2023 Apr 4;12:e87444. doi: 10.7554/eLife.87444. Elife. 2023. PMID: 37013952 Free PMC article.
Sequence clustering confounds AlphaFold2.
Schafer JW, Chakravarty D, Chen EA, Porter LL. Schafer JW, et al. Among authors: porter ll. bioRxiv [Preprint]. 2024 Jan 9:2024.01.05.574434. doi: 10.1101/2024.01.05.574434. bioRxiv. 2024. PMID: 38313252 Free PMC article. Preprint.
AlphaFold2 has more to learn about protein energy landscapes.
Chakravarty D, Schafer JW, Chen EA, Thole JR, Porter LL. Chakravarty D, et al. Among authors: porter ll. bioRxiv [Preprint]. 2023 Dec 13:2023.12.12.571380. doi: 10.1101/2023.12.12.571380. bioRxiv. 2023. PMID: 38168383 Free PMC article. Preprint.
The authors reply.
Porter LL, Simons KS, van den Boogaard M, Zegers M. Porter LL, et al. Crit Care Med. 2023 Nov 1;51(11):e245-e246. doi: 10.1097/CCM.0000000000005972. Epub 2023 Oct 12. Crit Care Med. 2023. PMID: 37902355 No abstract available.
Evolutionary selection of proteins with two folds.
Schafer JW, Porter LL. Schafer JW, et al. Among authors: porter ll. Nat Commun. 2023 Sep 6;14(1):5478. doi: 10.1038/s41467-023-41237-2. Nat Commun. 2023. PMID: 37673981 Free PMC article.
80 results